Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QVN05_RS01930 Genome accession   NZ_CP128912
Coordinates   417449..418126 (-) Length   225 a.a.
NCBI ID   WP_000178166.1    Uniprot ID   -
Organism   Escherichia coli strain TUM13773     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412449..423126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN05_RS01915 (QVN05_01915) chiA 413807..416509 (+) 2703 WP_000773168.1 bifunctional chitinase/lysozyme -
  QVN05_RS01920 (QVN05_01920) bfd 416678..416872 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  QVN05_RS01925 (QVN05_01925) bfr 416944..417420 (+) 477 WP_000675504.1 bacterioferritin -
  QVN05_RS01930 (QVN05_01930) pilD 417449..418126 (-) 678 WP_000178166.1 prepilin peptidase GspO Machinery gene
  QVN05_RS01935 (QVN05_01935) gspM 418126..418587 (-) 462 WP_001298207.1 type II secretion system protein GspM -
  QVN05_RS01940 (QVN05_01940) gspL 418584..419747 (-) 1164 WP_001335091.1 type II secretion system protein GspL -
  QVN05_RS01945 (QVN05_01945) gspK 419762..420745 (-) 984 WP_001058508.1 type II secretion system minor pseudopilin GspK -
  QVN05_RS01950 (QVN05_01950) gspJ 420738..421325 (-) 588 WP_000610638.1 type II secretion system minor pseudopilin GspJ -
  QVN05_RS01955 (QVN05_01955) gspI 421318..421695 (-) 378 WP_001041750.1 type II secretion system minor pseudopilin GspI -
  QVN05_RS01960 (QVN05_01960) gspH 421692..422201 (-) 510 WP_001076040.1 type II secretion system minor pseudopilin GspH -
  QVN05_RS01965 (QVN05_01965) gspG 422209..422646 (-) 438 WP_001202878.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24814.64 Da        Isoelectric Point: 7.6364

>NTDB_id=775734 QVN05_RS01930 WP_000178166.1 417449..418126(-) (pilD) [Escherichia coli strain TUM13773]
MTMLLPLFILVGFIAGYFVNAMAYHLSPLEDKTALTFRQVLAHFWQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=775734 QVN05_RS01930 WP_000178166.1 417449..418126(-) (pilD) [Escherichia coli strain TUM13773]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATGGCCTATCACCTCTC
GCCTTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGCTCATTTCTGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGCGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATTGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGCACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTCTGGATTAATTGATTTACATGATGCGGTTTATGGCGCGGTCGCTG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCGTGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGATATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

33.333

100

0.382