Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PIC52_RS05745 Genome accession   NZ_CP116100
Coordinates   1141638..1142267 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain DETEC-P881     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1136638..1147267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC52_RS05730 (PIC52_05730) helD 1136880..1138934 (-) 2055 WP_001385262.1 DNA helicase IV -
  PIC52_RS05735 (PIC52_05735) yccF 1139057..1139503 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PIC52_RS05740 (PIC52_05740) yccS 1139513..1141675 (+) 2163 WP_000875041.1 YccS family putative transporter -
  PIC52_RS05745 (PIC52_05745) sxy/tfoX 1141638..1142267 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PIC52_RS05750 (PIC52_05750) sulA 1142486..1142995 (+) 510 WP_001607139.1 SOS-induced cell division inhibitor SulA -
  PIC52_RS05755 (PIC52_05755) ompA 1143351..1144403 (+) 1053 WP_001346420.1 porin OmpA -
  PIC52_RS05760 (PIC52_05760) matP 1144479..1144931 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  PIC52_RS05765 (PIC52_05765) ycbZ 1145117..1146877 (+) 1761 WP_001607138.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=775724 PIC52_RS05745 WP_000839151.1 1141638..1142267(-) (sxy/tfoX) [Escherichia coli strain DETEC-P881]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=775724 PIC52_RS05745 WP_000839151.1 1141638..1142267(-) (sxy/tfoX) [Escherichia coli strain DETEC-P881]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995