Detailed information NTG0775662

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QVN13_RS07355
• Genome accession: NZ_CP128907
• Coordinates: 1503714..1504706 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TUM13881
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1498714..1509706

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVN13_RS07335 (QVN13_07335)	ygbM	1499352..1500128 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QVN13_RS07340 (QVN13_07340)	ygbN	1500217..1501581 (+)	1365	WP_000104433.1	GntP family transporter	-
QVN13_RS07345 (QVN13_07345)	-	1501724..1502767 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QVN13_RS07350 (QVN13_07350)	-	1502992..1503543 (+)	552	WP_001179444.1	flavodoxin family protein	-
QVN13_RS07355 (QVN13_07355)	rpoS	1503714..1504706 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QVN13_RS07360 (QVN13_07360)	nlpD	1504769..1505863 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QVN13_RS07365 (QVN13_07365)	pcm	1506048..1506674 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QVN13_RS07370 (QVN13_07370)	surE	1506668..1507429 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QVN13_RS07375 (QVN13_07375)	truD	1507410..1508459 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QVN13_RS07380 (QVN13_07380)	ispF	1508456..1508935 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QVN13_RS07385 (QVN13_07385)	ispD	1508935..1509645 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=775662 QVN13_RS07355 WP_000081550.1 1503714..1504706(-) (rpoS) [Escherichia coli strain TUM13881]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=775662 QVN13_RS07355 WP_000081550.1 1503714..1504706(-) (rpoS) [Escherichia coli strain TUM13881]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715