Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PIC30_RS16330 Genome accession   NZ_CP116071
Coordinates   3250261..3250890 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain DETEC-S589     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3245261..3255890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC30_RS16315 (PIC30_16315) helD 3245503..3247557 (-) 2055 WP_001350178.1 DNA helicase IV -
  PIC30_RS16320 (PIC30_16320) yccF 3247680..3248126 (+) 447 WP_001261236.1 YccF domain-containing protein -
  PIC30_RS16325 (PIC30_16325) yccS 3248136..3250298 (+) 2163 WP_166709532.1 YccS family putative transporter -
  PIC30_RS16330 (PIC30_16330) sxy/tfoX 3250261..3250890 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PIC30_RS16335 (PIC30_16335) sulA 3251109..3251618 (+) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  PIC30_RS16340 (PIC30_16340) ompA 3251974..3253014 (+) 1041 WP_001350588.1 porin OmpA -
  PIC30_RS16345 (PIC30_16345) matP 3253092..3253544 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  PIC30_RS16350 (PIC30_16350) ycbZ 3253730..3255490 (+) 1761 WP_000156501.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=775625 PIC30_RS16330 WP_000839136.1 3250261..3250890(-) (sxy/tfoX) [Escherichia coli strain DETEC-S589]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=775625 PIC30_RS16330 WP_000839136.1 3250261..3250890(-) (sxy/tfoX) [Escherichia coli strain DETEC-S589]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99