Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PID00_RS00420 Genome accession   NZ_CP116067
Coordinates   91333..91962 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain DETEC-S792     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 86333..96962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PID00_RS00400 (PID00_00400) ycbZ 86724..88484 (-) 1761 WP_000156476.1 AAA family ATPase -
  PID00_RS00405 (PID00_00405) matP 88670..89122 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PID00_RS00410 (PID00_00410) ompA 89198..90250 (-) 1053 WP_001563012.1 porin OmpA -
  PID00_RS00415 (PID00_00415) sulA 90606..91115 (-) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  PID00_RS00420 (PID00_00420) sxy/tfoX 91333..91962 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PID00_RS00425 (PID00_00425) yccS 91925..94087 (-) 2163 WP_000875041.1 YccS family putative transporter -
  PID00_RS00430 (PID00_00430) yccF 94097..94543 (-) 447 WP_001261235.1 YccF domain-containing protein -
  PID00_RS00435 (PID00_00435) helD 94666..96720 (+) 2055 WP_271290621.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=775589 PID00_RS00420 WP_000839153.1 91333..91962(+) (sxy/tfoX) [Escherichia coli strain DETEC-S792]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=775589 PID00_RS00420 WP_000839153.1 91333..91962(+) (sxy/tfoX) [Escherichia coli strain DETEC-S792]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1