Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QVN08_RS01990 Genome accession   NZ_CP128888
Coordinates   424872..425549 (-) Length   225 a.a.
NCBI ID   WP_000178168.1    Uniprot ID   -
Organism   Escherichia coli strain TUM14697     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419872..430549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN08_RS01975 (QVN08_01975) chiA 421230..423932 (+) 2703 WP_000773178.1 bifunctional chitinase/lysozyme -
  QVN08_RS01980 (QVN08_01980) bfd 424101..424295 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  QVN08_RS01985 (QVN08_01985) bfr 424367..424843 (+) 477 WP_000675503.1 bacterioferritin -
  QVN08_RS01990 (QVN08_01990) pilD 424872..425549 (-) 678 WP_000178168.1 prepilin peptidase GspO Machinery gene
  QVN08_RS01995 (QVN08_01995) gspM 425549..426010 (-) 462 WP_001385521.1 type II secretion system protein GspM -
  QVN08_RS02000 (QVN08_02000) gspL 426007..427170 (-) 1164 WP_001296464.1 type II secretion system protein GspL -
  QVN08_RS02005 (QVN08_02005) gspK 427185..428168 (-) 984 WP_001058515.1 type II secretion system minor pseudopilin GspK -
  QVN08_RS02010 (QVN08_02010) gspJ 428161..428748 (-) 588 WP_000610632.1 type II secretion system minor pseudopilin GspJ -
  QVN08_RS02015 (QVN08_02015) gspI 428741..429118 (-) 378 WP_001041749.1 type II secretion system minor pseudopilin GspI -
  QVN08_RS02020 (QVN08_02020) gspH 429115..429624 (-) 510 WP_001076039.1 type II secretion system minor pseudopilin GspH -
  QVN08_RS02025 (QVN08_02025) gspG 429632..430069 (-) 438 WP_001202877.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24856.72 Da        Isoelectric Point: 7.6364

>NTDB_id=775567 QVN08_RS01990 WP_000178168.1 424872..425549(-) (pilD) [Escherichia coli strain TUM14697]
MTMLLPLFILVGFIAGYFVNAMAYHLSPLEDKTALTFRQVLIHFWQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=775567 QVN08_RS01990 WP_000178168.1 424872..425549(-) (pilD) [Escherichia coli strain TUM14697]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATGGCCTATCACCTCTC
GCCTTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGATTCATTTCTGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGCGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGCACTCACGCTCAGTGTCATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTCTGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTCGCTG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCGTGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGATATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

33.333

100

0.387