Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QVN09_RS17810 Genome accession   NZ_CP128877
Coordinates   3698293..3698898 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain TUM14759     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3693293..3703898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN09_RS17790 (QVN09_17790) aes 3693434..3694393 (+) 960 WP_024043849.1 acetyl esterase -
  QVN09_RS17795 (QVN09_17795) hemH 3694390..3695352 (-) 963 WP_289414667.1 ferrochelatase -
  QVN09_RS17800 (QVN09_17800) adk 3695484..3696128 (-) 645 WP_001220233.1 adenylate kinase -
  QVN09_RS17805 (QVN09_17805) htpG 3696309..3698183 (-) 1875 WP_000678197.1 molecular chaperone HtpG -
  QVN09_RS17810 (QVN09_17810) recR 3698293..3698898 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QVN09_RS17815 (QVN09_17815) ybaB 3698898..3699227 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QVN09_RS17820 (QVN09_17820) dnaX 3699280..3701211 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  QVN09_RS17825 (QVN09_17825) apt 3701340..3701891 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QVN09_RS17830 (QVN09_17830) ybaN 3702044..3702421 (-) 378 WP_001188905.1 DUF454 family protein -
  QVN09_RS17835 (QVN09_17835) priC 3702491..3703018 (+) 528 WP_000844861.1 primosomal replication protein N'' -
  QVN09_RS17840 (QVN09_17840) rsmS 3703032..3703193 (+) 162 WP_000051157.1 pleiotropic regulatory protein RsmS -
  QVN09_RS17845 (QVN09_17845) - 3703246..3703344 (-) 99 Protein_3501 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=775531 QVN09_RS17810 WP_001195025.1 3698293..3698898(-) (recR) [Escherichia coli strain TUM14759]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=775531 QVN09_RS17810 WP_001195025.1 3698293..3698898(-) (recR) [Escherichia coli strain TUM14759]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443