Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   PGW89_RS15695 Genome accession   NZ_CP116040
Coordinates   3400072..3400416 (+) Length   114 a.a.
NCBI ID   WP_042110486.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3395072..3405416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS15665 (PGW89_15665) - 3395598..3396578 (+) 981 WP_026070437.1 DNA polymerase III subunit delta' -
  PGW89_RS15670 (PGW89_15670) - 3396722..3397030 (+) 309 WP_004639308.1 hypothetical protein -
  PGW89_RS15675 (PGW89_15675) - 3397353..3397697 (+) 345 WP_004639306.1 PilZ domain-containing protein -
  PGW89_RS15680 (PGW89_15680) - 3397718..3398491 (+) 774 WP_113997230.1 TatD family hydrolase -
  PGW89_RS15685 (PGW89_15685) - 3398533..3399138 (+) 606 WP_017394545.1 TetR/AcrR family transcriptional regulator -
  PGW89_RS15690 (PGW89_15690) - 3399153..3399764 (+) 612 WP_005080458.1 type II secretion system protein -
  PGW89_RS15695 (PGW89_15695) xcpV 3400072..3400416 (+) 345 WP_042110486.1 type II secretion system protein Machinery gene
  PGW89_RS15700 (PGW89_15700) xcpW 3400422..3401201 (+) 780 WP_113997232.1 type II secretion system minor pseudopilin GspJ Machinery gene
  PGW89_RS15705 (PGW89_15705) gspK 3401203..3402180 (+) 978 WP_113997233.1 type II secretion system minor pseudopilin GspK -
  PGW89_RS15710 (PGW89_15710) - 3402266..3402862 (+) 597 WP_017394547.1 6-carboxytetrahydropterin synthase -
  PGW89_RS15715 (PGW89_15715) ung 3402909..3403622 (+) 714 WP_005080468.1 uracil-DNA glycosylase -
  PGW89_RS15720 (PGW89_15720) - 3403619..3404743 (+) 1125 WP_171055793.1 enoyl-CoA hydratase/isomerase family protein -
  PGW89_RS15725 (PGW89_15725) tadA 3404748..3405260 (+) 513 WP_005080470.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12655.56 Da        Isoelectric Point: 6.4632

>NTDB_id=775519 PGW89_RS15695 WP_042110486.1 3400072..3400416(+) (xcpV) [Acinetobacter haemolyticus strain HW-2]
MVALAIFAVAAIALTKIAMQYTQATSNAILRTKAQFVAMNEVAMMEINKEWLDGTQSKQITSQGETWQIDKKAQATISPK
VQRIELQVSLFNVDQDKVEAGVGHLVFFNHQTES

Nucleotide


Download         Length: 345 bp        

>NTDB_id=775519 PGW89_RS15695 WP_042110486.1 3400072..3400416(+) (xcpV) [Acinetobacter haemolyticus strain HW-2]
ATGGTGGCTTTGGCAATTTTTGCAGTGGCTGCAATCGCGCTAACAAAAATAGCCATGCAATATACGCAAGCAACCTCAAA
TGCAATTTTACGTACTAAGGCTCAATTTGTTGCAATGAATGAGGTTGCAATGATGGAGATTAACAAAGAGTGGTTGGATG
GAACCCAATCCAAACAAATCACTTCACAAGGTGAAACATGGCAAATTGATAAAAAAGCACAAGCAACGATTAGCCCCAAA
GTTCAGCGGATCGAATTACAAGTGAGTTTATTTAACGTTGATCAAGATAAAGTTGAAGCGGGTGTTGGTCATCTAGTGTT
TTTCAATCATCAGACTGAAAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

80

96.491

0.772