Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QVN09_RS05880 Genome accession   NZ_CP128877
Coordinates   1215247..1215762 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain TUM14759     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1210247..1220762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN09_RS05840 (QVN09_05840) csrA 1211140..1211325 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  QVN09_RS05865 (QVN09_05865) yqaB 1212477..1213043 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QVN09_RS05870 (QVN09_05870) yqaA 1213040..1213468 (+) 429 WP_001287455.1 YqaA family protein -
  QVN09_RS05875 (QVN09_05875) gshA 1213541..1215097 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  QVN09_RS05880 (QVN09_05880) luxS 1215247..1215762 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  QVN09_RS05885 (QVN09_05885) emrB 1215826..1217364 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QVN09_RS05890 (QVN09_05890) emrA 1217381..1218553 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QVN09_RS05895 (QVN09_05895) emrR 1218680..1219210 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QVN09_RS05900 (QVN09_05900) ygaH 1219301..1219636 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  QVN09_RS05905 (QVN09_05905) ygaZ 1219626..1220363 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=775501 QVN09_RS05880 WP_001130211.1 1215247..1215762(+) (luxS) [Escherichia coli strain TUM14759]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=775501 QVN09_RS05880 WP_001130211.1 1215247..1215762(+) (luxS) [Escherichia coli strain TUM14759]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGTGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731