Detailed information NTG0775498

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QVN09_RS05580
• Genome accession: NZ_CP128877
• Coordinates: 1158666..1159658 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TUM14759
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1153666..1164658

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVN09_RS05550 (QVN09_05550)	ispD	1153727..1154437 (+)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QVN09_RS05555 (QVN09_05555)	ispF	1154437..1154916 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QVN09_RS05560 (QVN09_05560)	truD	1154913..1155962 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
QVN09_RS05565 (QVN09_05565)	surE	1155943..1156704 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QVN09_RS05570 (QVN09_05570)	pcm	1156698..1157324 (+)	627	WP_000254706.1	protein-L-isoaspartate O-methyltransferase	-
QVN09_RS05575 (QVN09_05575)	nlpD	1157509..1158603 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QVN09_RS05580 (QVN09_05580)	rpoS	1158666..1159658 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QVN09_RS05585 (QVN09_05585)	-	1159779..1160186 (-)	408	WP_001208079.1	MarR family transcriptional regulator	-
QVN09_RS05590 (QVN09_05590)	-	1160333..1160926 (+)	594	WP_001237177.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QVN09_RS05595 (QVN09_05595)	-	1160926..1162353 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QVN09_RS05600 (QVN09_05600)	-	1162364..1162600 (+)	237	WP_000562977.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QVN09_RS05605 (QVN09_05605)	ygbN	1162639..1164003 (-)	1365	WP_000104454.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=775498 QVN09_RS05580 WP_000081550.1 1158666..1159658(+) (rpoS) [Escherichia coli strain TUM14759]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=775498 QVN09_RS05580 WP_000081550.1 1158666..1159658(+) (rpoS) [Escherichia coli strain TUM14759]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715