Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   PGW89_RS06825 Genome accession   NZ_CP116040
Coordinates   1459186..1459512 (-) Length   108 a.a.
NCBI ID   WP_113997836.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1454186..1464512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS06805 (PGW89_06805) - 1454493..1455101 (-) 609 WP_026070334.1 FHA domain-containing protein -
  PGW89_RS06810 (PGW89_06810) gspD 1455180..1457390 (-) 2211 WP_113997834.1 type II secretion system secretin GspD -
  PGW89_RS06815 (PGW89_06815) - 1457432..1458268 (-) 837 WP_113997835.1 type II secretion system protein N -
  PGW89_RS06820 (PGW89_06820) gspN 1458268..1459011 (-) 744 WP_026056326.1 type II secretion system protein N -
  PGW89_RS06825 (PGW89_06825) hns 1459186..1459512 (-) 327 WP_113997836.1 H-NS histone family protein Regulator
  PGW89_RS06830 (PGW89_06830) - 1459944..1460375 (-) 432 WP_005083921.1 thioesterase family protein -
  PGW89_RS06835 (PGW89_06835) - 1460384..1461577 (-) 1194 WP_113997837.1 heme biosynthesis protein HemY -
  PGW89_RS06840 (PGW89_06840) - 1461583..1462410 (-) 828 WP_017395054.1 hypothetical protein -
  PGW89_RS06845 (PGW89_06845) - 1462407..1463183 (-) 777 WP_004637621.1 uroporphyrinogen-III synthase -
  PGW89_RS06850 (PGW89_06850) hemC 1463183..1464100 (-) 918 WP_004637620.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12265.96 Da        Isoelectric Point: 5.0269

>NTDB_id=775488 PGW89_RS06825 WP_113997836.1 1459186..1459512(-) (hns) [Acinetobacter haemolyticus strain HW-2]
MKPDISDLSVEDLKRLQAEAEALIESKKDQAIEDAYNQIIAIADGIGLTVEELLAVGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=775488 PGW89_RS06825 WP_113997836.1 1459186..1459512(-) (hns) [Acinetobacter haemolyticus strain HW-2]
ATGAAACCAGATATTAGTGATTTATCAGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCTGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAATTGAAGATGCATATAATCAAATCATAGCAATTGCTGATGGTATTGGTTTAACTGTTGAAGAGTTAT
TGGCTGTAGGTGAGCAAAAGCGTAAAAAGACTACGCGTAAAGCTGTAGAACCACGCTACCGCAATAAAAATAATACTGAA
GAAACTTGGACTGGTCGTGGTAAACAACCGCGTTGGTTGGTTGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

84.259

100

0.843