Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   PGW89_RS06325 Genome accession   NZ_CP116040
Coordinates   1344368..1346593 (+) Length   741 a.a.
NCBI ID   WP_113998004.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1339368..1351593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS06305 (PGW89_06305) lnt 1340168..1341727 (+) 1560 WP_113997794.1 apolipoprotein N-acyltransferase -
  PGW89_RS06310 (PGW89_06310) - 1341816..1342160 (-) 345 WP_004637735.1 hypothetical protein -
  PGW89_RS06315 (PGW89_06315) gspG 1342424..1343014 (-) 591 WP_113997795.1 type II secretion system major pseudopilin GspG -
  PGW89_RS06320 (PGW89_06320) gspF 1343014..1344219 (-) 1206 WP_005083777.1 type II secretion system inner membrane protein GspF -
  PGW89_RS06325 (PGW89_06325) priA 1344368..1346593 (+) 2226 WP_113998004.1 primosomal protein N' Machinery gene
  PGW89_RS06330 (PGW89_06330) - 1346634..1348451 (+) 1818 WP_113997796.1 cation:proton antiporter -
  PGW89_RS06335 (PGW89_06335) - 1348560..1349432 (+) 873 WP_113997797.1 Hsp33 family molecular chaperone HslO -
  PGW89_RS06340 (PGW89_06340) - 1349542..1349892 (-) 351 WP_113997798.1 hypothetical protein -
  PGW89_RS06345 (PGW89_06345) - 1350056..1351018 (+) 963 WP_113997799.1 DnaJ C-terminal domain-containing protein -
  PGW89_RS06350 (PGW89_06350) - 1351030..1351356 (+) 327 WP_004637727.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84376.30 Da        Isoelectric Point: 8.4587

>NTDB_id=775484 PGW89_RS06325 WP_113998004.1 1344368..1346593(+) (priA) [Acinetobacter haemolyticus strain HW-2]
MPSENSNAILYRIRVAIPVYVYDTFDYTVSAEQYQQAQIGARVAVSFGRQNLVGIIVEKIDPDEVFTGQFKLKAITELLD
KEAILDQHVLTLMTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHQWKIVPNDDPNVLLKRSQKQYDAYQILKIHPHG
TTENVLNLSGVETATLKALEKKGLVECCLEPHDFSPTPVQLAQVPLTANEDQKRAIQQILKEQHHYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDIALLHSGLNDSKRLQAWQHAQTGKASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSYKQQEGFRYHTRDVALYRGYLQHCPVILGSATPSIDSYHLVESGKLHLLELNQRAGVAVLPKMHV
IDLKIAKKKHGISQNLIEQIKLTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIN
RLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHNEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGNVYLQSLRPDHPMFTTLIEHDYRTVAKQMLAERKLAML
PPYRYTVLVRVESKDREYSQNFLADIAQQLRTMAGDLVDIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=775484 PGW89_RS06325 WP_113998004.1 1344368..1346593(+) (priA) [Acinetobacter haemolyticus strain HW-2]
ATGCCTAGCGAAAATTCTAACGCCATTTTGTACCGTATTCGAGTTGCCATACCTGTATATGTGTATGACACGTTTGACTA
TACGGTCAGTGCCGAACAGTATCAACAAGCACAGATTGGAGCGCGTGTTGCAGTATCGTTCGGACGACAAAATCTCGTAG
GCATCATTGTTGAAAAAATTGATCCCGATGAAGTTTTCACAGGTCAATTTAAACTGAAAGCAATTACTGAATTACTTGAT
AAAGAAGCAATATTAGATCAACACGTTTTAACTTTGATGACATGGTCTGCCCAGTACTATCAATTCCCAATTGGCGAAGT
GATGCAAAGTGCCCTCCCCACACTACTCAGACAAGGGCGTGCATTAGACATTTTATTTCATCAGTGGAAAATCGTGCCAA
ATGATGATCCGAATGTATTATTGAAGCGCTCACAAAAACAATATGATGCGTATCAAATCTTAAAAATACATCCTCATGGC
ACAACTGAAAATGTCTTGAACCTCAGTGGTGTTGAAACTGCAACACTGAAAGCTTTAGAAAAGAAAGGGTTGGTTGAATG
TTGTCTGGAACCGCATGATTTTAGCCCCACACCTGTACAATTGGCGCAAGTACCACTCACAGCCAATGAGGATCAAAAAA
GAGCGATTCAACAAATCCTCAAAGAGCAGCATCATTACCAAGCATTTTTACTGGATGGCTTAACAGGCAGTGGCAAAACT
GAAGTTTATCTGCAAGTCATGCATGAAGTATTAAAGCAGGGTAAGCAGGTGTTGGTACTGGTTCCAGAAATCGGCCTTAC
CCCTCAAACTGTCGCTCGCTTTAAATCACGTTTTCATTGTGATATTGCTTTATTACATTCAGGTTTAAATGACTCGAAGC
GCTTACAAGCATGGCAACACGCACAAACAGGAAAAGCTTCGATTGTGATCGGGACCCGTTCTGCGATCTACACGCCGCTT
CCTCATCTAGGACTGATTGTCCTCGATGAAGAGCATGATCTTTCTTATAAACAGCAAGAAGGCTTTCGTTATCATACCCG
TGATGTAGCGCTCTACAGAGGATACTTACAACACTGTCCTGTGATTCTTGGATCTGCAACACCGAGTATCGATAGCTATC
ATCTGGTCGAGTCAGGCAAACTACATCTACTGGAACTCAATCAACGTGCTGGCGTCGCTGTCCTGCCTAAAATGCATGTG
ATTGATTTAAAAATTGCCAAGAAAAAGCATGGTATCAGCCAAAATTTAATTGAGCAGATCAAACTCACCTTAGAACGCAA
AGAACAGGTGTTGATCTTTCTCAACCGTCGGGGCTATGCACCAATTCTGATGTGTGAAAGTTGTGGTTGGCAAGCCAATT
GCCCCCATTGTGATGCGCATTTCACCCTTCATTCTCAGCCTTATCACTATTTACATTGTCATCATTGCGGCACCATCAAT
CGCCTCCCTGATCATTGCCCAGCATGCCAAAAACAAAGTTTAAAAACGATTGGCGCTGGAACGGCAAAACTTGAAGAGCA
TTTACAAGAGTTATTTCCTCACAATGAAGTGATTCGAGTTGATCGTGACAGTACCAGCCGTGTCGGAAGTTGGCAGAAAA
TTTATGACCGTATCCAACAAAATAAACCGAGTATTTTATTGGGCACACAAATGCTTGCTAAAGGACATCATTTCCCACAT
GTAACTTTGGTGGCTATTTTAGATATTGACGCTGGTTTACTGAGCGTGGATATCCGCGCCCCTGAACGTACCGCACAATT
AATAGTACAAGTGGCCGGACGCGCTGGACGAGGCGAACATAAAGGGAATGTCTATTTACAAAGTCTTCGCCCTGATCATC
CTATGTTTACCACATTAATTGAACATGACTATCGTACGGTTGCCAAACAAATGCTGGCTGAGCGTAAACTTGCAATGCTC
CCTCCATATCGTTATACAGTATTGGTACGTGTTGAATCGAAAGATCGAGAATATAGCCAGAACTTTTTGGCGGATATTGC
GCAACAACTGAGAACAATGGCTGGCGATTTAGTTGATATTTGGGGGCCAATTCCCGCACCGATGGAACGTAAAGCTGGAC
GTTATCGTGCCCACATGGTGATTTTGTCGGCCGATCGCGCCAAACTGCATTTTTATTTGCGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGTCAGCACCAACTCAGGCTATCTATCGATGTTGATCCACAAGAGTTTAGTTAG

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.905

99.19

0.812