Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   PGW89_RS05820 Genome accession   NZ_CP116040
Coordinates   1247141..1248025 (-) Length   294 a.a.
NCBI ID   WP_017394567.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1242141..1253025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS05795 (PGW89_05795) miaB 1243270..1244721 (+) 1452 WP_004637839.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  PGW89_RS05800 (PGW89_05800) - 1244761..1245840 (+) 1080 WP_017394568.1 PhoH family protein -
  PGW89_RS05805 (PGW89_05805) ybeY 1245859..1246344 (+) 486 WP_113997761.1 rRNA maturation RNase YbeY -
  PGW89_RS05810 (PGW89_05810) - 1246356..1246655 (+) 300 WP_113997762.1 antibiotic biosynthesis monooxygenase -
  PGW89_RS05815 (PGW89_05815) - 1246686..1247111 (-) 426 WP_162784530.1 hypothetical protein -
  PGW89_RS05820 (PGW89_05820) tonB2 1247141..1248025 (-) 885 WP_017394567.1 TonB family protein Machinery gene
  PGW89_RS05825 (PGW89_05825) - 1248261..1248944 (+) 684 WP_004637833.1 hypothetical protein -
  PGW89_RS05830 (PGW89_05830) - 1249139..1249855 (+) 717 WP_113997764.1 DUF3108 domain-containing protein -
  PGW89_RS05835 (PGW89_05835) - 1250000..1250575 (+) 576 WP_004637831.1 xanthine phosphoribosyltransferase -
  PGW89_RS05840 (PGW89_05840) - 1250621..1251394 (-) 774 WP_004637830.1 YwqG family protein -
  PGW89_RS05845 (PGW89_05845) thyA 1251566..1252408 (+) 843 WP_004637829.1 thymidylate synthase -
  PGW89_RS05850 (PGW89_05850) - 1252429..1252938 (+) 510 WP_004637828.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33535.02 Da        Isoelectric Point: 6.8580

>NTDB_id=775483 PGW89_RS05820 WP_017394567.1 1247141..1248025(-) (tonB2) [Acinetobacter haemolyticus strain HW-2]
MWNKINFRTQMTSFWWQDPIFVGAVVIAIMVHGLVLTTQFSMPSPTDTSTKEIAVSVRPSQDKVEHADFLAQTDQQGSGE
FHQAHRMSSDMPTPMQSDATTGEHELESLETIQQKRELLFEEKVLMTVLSWQKQAEQNERKKALEELQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLAGEVRLMVILNAQGGIRAIRL
IESSGHPILDEAARASVRRGAPFGAFDSSMKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=775483 PGW89_RS05820 WP_017394567.1 1247141..1248025(-) (tonB2) [Acinetobacter haemolyticus strain HW-2]
ATGTGGAATAAAATAAATTTTCGTACTCAAATGACTTCCTTTTGGTGGCAAGATCCGATTTTTGTTGGAGCAGTTGTTAT
TGCAATCATGGTACATGGCCTCGTACTGACAACACAATTTTCGATGCCGTCACCTACTGATACATCAACCAAAGAAATCG
CCGTGTCTGTACGTCCAAGTCAAGATAAGGTCGAGCATGCAGATTTTTTAGCGCAAACTGATCAACAAGGATCAGGTGAA
TTTCATCAAGCACATCGTATGTCTAGTGATATGCCTACGCCAATGCAAAGTGATGCAACCACAGGAGAGCATGAGCTAGA
AAGTCTCGAAACCATACAACAGAAGCGTGAACTCCTCTTTGAGGAAAAAGTGTTAATGACAGTGTTAAGTTGGCAAAAGC
AAGCTGAACAGAATGAACGTAAGAAAGCATTAGAAGAATTACAAAGTCAATTTCAAGCCAAAGCTGCGATGGTGGCAAGT
TTAGAAGCGCAATATTTACAACGCCAACAAAATTTTAGCCGTAAGCAACGTATTAAAACGGTTGATGGGATACAAGCGAA
ACAAGATGCATCGGCAGCATATCTCGATAAATTCCGACAAAAAGTTGAGTTGTATGGCAATCGTTATTATCCCGATGCGG
CAAAACAGCAACGCTTAGCGGGTGAAGTACGTTTAATGGTGATTTTAAATGCGCAAGGCGGTATCCGAGCCATTCGTTTA
ATTGAGAGCTCAGGACATCCGATTTTGGATGAAGCAGCTCGTGCTTCTGTTCGCCGTGGTGCACCATTTGGAGCTTTTGA
CAGCAGTATGAAAGATATTTCTGAGTTACGCATTATCCGAACATGGCGTTTTGATCCAGTGGATGCTGAATTTGAAGTGC
ATTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.49

100

0.745