Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QVN09_RS00940 Genome accession   NZ_CP128877
Coordinates   208781..209764 (+) Length   327 a.a.
NCBI ID   WP_024042372.1    Uniprot ID   -
Organism   Escherichia coli strain TUM14759     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 203781..214764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN09_RS00925 (QVN09_00925) dppA 205081..206688 (+) 1608 WP_001222876.1 dipeptide ABC transporter substrate-binding protein DppA -
  QVN09_RS00930 (QVN09_00930) dppB 206839..207858 (+) 1020 WP_000938853.1 dipeptide ABC transporter permease DppB -
  QVN09_RS00935 (QVN09_00935) dppC 207868..208770 (+) 903 WP_000084667.1 dipeptide ABC transporter permease DppC -
  QVN09_RS00940 (QVN09_00940) amiE 208781..209764 (+) 984 WP_024042372.1 dipeptide ABC transporter ATP-binding protein Regulator
  QVN09_RS00945 (QVN09_00945) dppF 209761..210765 (+) 1005 WP_000103580.1 dipeptide ABC transporter ATP-binding subunit DppF -
  QVN09_RS00950 (QVN09_00950) yhjV 210795..212066 (-) 1272 WP_024044811.1 aromatic amino acid transport family protein -
  QVN09_RS00955 (QVN09_00955) - 212542..212649 (+) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -
  QVN09_RS00960 (QVN09_00960) - 213025..213132 (+) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35832.35 Da        Isoelectric Point: 6.5813

>NTDB_id=775478 QVN09_RS00940 WP_024042372.1 208781..209764(+) (amiE) [Escherichia coli strain TUM14759]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDKCRAEEPALNMLSDGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=775478 QVN09_RS00940 WP_024042372.1 208781..209764(+) (amiE) [Escherichia coli strain TUM14759]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCACCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCTGGTAAATCGGTCAGTTCGCTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCGGAAAAGCTGGAGTTTAACGGTCAGGATTTACAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGGGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAGCTGCTGATTGCCGATGAACCAACCACTGCGCTGGACGTGAC
CATTCAGGCGCAAATTATCGAACTGCTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTGATCACTCATGACC
TGGCACTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACGGGCGATGCCCACGCC
ATCTTCCATGCGCCGCGTCATCCATATACTCAGGCATTGCTGCGTGCGCTGCCGGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTTGTTCCCGGCAAGTATGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAAATGCCGCGCTGAAGAACCGGCGCTGAATATGCTCTCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(24-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.614

98.165

0.428
  amiE Streptococcus thermophilus LMG 18311

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMD-9

43.302

98.165

0.425
  oppD Streptococcus mutans UA159

41.693

97.554

0.407