Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PGW89_RS01645 Genome accession   NZ_CP116040
Coordinates   354839..355792 (-) Length   317 a.a.
NCBI ID   WP_113997390.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349839..360792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS01620 (PGW89_01620) - 349887..350678 (-) 792 WP_208464689.1 DUF4198 domain-containing protein -
  PGW89_RS01625 (PGW89_01625) - 350909..352129 (+) 1221 WP_113997388.1 MFS transporter -
  PGW89_RS01630 (PGW89_01630) - 352175..353125 (-) 951 WP_113997389.1 ABC transporter substrate-binding protein -
  PGW89_RS01635 (PGW89_01635) - 353135..353899 (-) 765 WP_005081102.1 ATP-binding cassette domain-containing protein -
  PGW89_RS01640 (PGW89_01640) - 353890..354846 (-) 957 WP_005081105.1 iron chelate uptake ABC transporter family permease subunit -
  PGW89_RS01645 (PGW89_01645) ceuB 354839..355792 (-) 954 WP_113997390.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  PGW89_RS01650 (PGW89_01650) - 356111..356728 (-) 618 WP_004638651.1 LysE family translocator -
  PGW89_RS01655 (PGW89_01655) - 356819..357793 (-) 975 WP_113997391.1 ion transporter -
  PGW89_RS01660 (PGW89_01660) - 358063..359520 (+) 1458 WP_113997392.1 DASS family sodium-coupled anion symporter -
  PGW89_RS01665 (PGW89_01665) - 359672..360253 (-) 582 WP_005081115.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34529.63 Da        Isoelectric Point: 9.4658

>NTDB_id=775478 PGW89_RS01645 WP_113997390.1 354839..355792(-) (ceuB) [Acinetobacter haemolyticus strain HW-2]
MIKRRYLLVLLIPLALISLFVGVGDMSLEGLIAGNPQDWQLFWTSRLPRLMAIVVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLISIILLPSASIFAKTGFAIIVTLIGAMTFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQLDL
LQNLAGWLQGDFSTILNGQYELIYLSIPVLALIYLFANRFVLAGLGEDFATNLGLNYKQTLFLGLLLVSVITGVVIVTVG
AIPFLGLIVPNLVSLYLGDHIRKTLSHTALLGALLVLLCDVFGRVVIYPYEVSVSLIMGVVGSVIFLWLLLRRYRYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=775478 PGW89_RS01645 WP_113997390.1 354839..355792(-) (ceuB) [Acinetobacter haemolyticus strain HW-2]
ATGATTAAACGGCGCTATTTACTGGTTTTACTCATACCTTTGGCTTTGATTTCCTTGTTTGTTGGTGTAGGGGATATGAG
TCTTGAAGGATTGATTGCAGGAAATCCACAAGATTGGCAACTCTTTTGGACGAGTCGATTACCACGCCTGATGGCGATTG
TTGTTGCAGGTGCTGGGTTAAGTGTCTGCGGTTTAATTATGCAGTCATTAAGTCGAAATCGCTTTGTTTCACCAACCACA
GCGGGTTTATATGACTGTGCACGGCTGGGCGTTTTAATTTCGATTATTTTGCTTCCAAGTGCTTCTATTTTTGCCAAAAC
TGGATTTGCGATTATTGTCACGCTGATTGGTGCGATGACATTTATGAGTATTCTTGCCACTTTAAAGCACCGAGATACGG
TATTTGTGCCACTCGTTGGGATGATTTTTGGCAGCATTATTTCTGCATTTACGACTTTTATTGCTTTGCAACTTGATTTG
TTGCAGAACTTAGCAGGGTGGTTGCAAGGCGATTTCTCAACCATTTTGAATGGTCAATATGAATTGATTTATTTAAGTAT
TCCCGTTCTCGCCTTGATTTATTTATTTGCCAATCGTTTTGTCTTGGCCGGCTTGGGTGAAGACTTTGCGACAAATCTAG
GTTTGAACTATAAACAGACACTTTTCTTAGGTTTGCTGCTGGTCTCAGTAATTACTGGTGTAGTGATTGTGACTGTCGGC
GCAATTCCTTTTCTCGGTTTAATTGTACCAAATCTAGTCAGCCTTTATTTAGGCGATCATATTCGCAAGACGCTTTCACA
TACGGCACTGCTTGGTGCGTTGCTGGTCTTACTGTGTGATGTTTTTGGTCGAGTGGTGATTTATCCCTATGAGGTTTCGG
TCAGCCTGATTATGGGTGTAGTCGGTAGTGTGATCTTCCTGTGGTTATTACTCAGGAGGTATCGATATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.521

98.738

0.489