Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PGH12_RS09470 Genome accession   NZ_CP116034
Coordinates   2067812..2069161 (+) Length   449 a.a.
NCBI ID   WP_267599594.1    Uniprot ID   -
Organism   Chryseobacterium sp. CY350     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2062812..2074161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGH12_RS09455 (PGH12_09455) yidC 2063349..2065148 (-) 1800 WP_267599597.1 membrane protein insertase YidC -
  PGH12_RS09460 (PGH12_09460) - 2065325..2066938 (-) 1614 WP_267599596.1 CTP synthase -
  PGH12_RS09465 (PGH12_09465) - 2067142..2067708 (-) 567 WP_267599595.1 YceI family protein -
  PGH12_RS09470 (PGH12_09470) radA 2067812..2069161 (+) 1350 WP_267599594.1 DNA repair protein RadA Machinery gene
  PGH12_RS09475 (PGH12_09475) - 2069236..2070774 (+) 1539 WP_267599592.1 zinc-dependent metalloprotease -
  PGH12_RS09480 (PGH12_09480) - 2070855..2071448 (+) 594 WP_267599590.1 ACP phosphodiesterase -
  PGH12_RS09485 (PGH12_09485) - 2071456..2071956 (-) 501 WP_267599588.1 DUF6702 family protein -
  PGH12_RS09490 (PGH12_09490) - 2071953..2072255 (-) 303 WP_267599587.1 hypothetical protein -
  PGH12_RS09495 (PGH12_09495) - 2072231..2072479 (-) 249 WP_267599585.1 hypothetical protein -
  PGH12_RS09500 (PGH12_09500) - 2072548..2073126 (+) 579 WP_267599583.1 HupE/UreJ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49787.44 Da        Isoelectric Point: 6.7488

>NTDB_id=775439 PGH12_RS09470 WP_267599594.1 2067812..2069161(+) (radA) [Chryseobacterium sp. CY350]
MAKLRTAYFCQNCGSQYSQWMGQCKNCGEWNTLVEEIVEKTPKKSLSPSKTKQSVINIIEVEAIEEPRIKTPSDELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKVFYVSGEESASQIKMRADRLADVKNPNCFLYTETSLEKILHEAKKL
EPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKEYNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHYCFAGEIGLSGEIRPI
AQAEQRITEAEKLGYEKIFISNLNKLPKKKFGIKIEEVSKVEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=775439 PGH12_RS09470 WP_267599594.1 2067812..2069161(+) (radA) [Chryseobacterium sp. CY350]
ATGGCAAAACTGAGAACAGCATATTTCTGTCAAAACTGCGGATCGCAGTATTCACAATGGATGGGACAGTGTAAAAACTG
TGGCGAATGGAATACTTTGGTAGAAGAAATTGTAGAAAAAACTCCGAAAAAAAGTTTATCTCCTTCAAAAACCAAACAAA
GCGTCATCAACATCATTGAAGTTGAAGCAATTGAAGAACCTCGTATCAAAACTCCTTCCGATGAACTCAACCGTGTTTTG
GGAGGCGGAATTGTGTTAGGTTCGGTCACATTGATCGGTGGAGAACCGGGAATCGGGAAATCTACTCTACTTCTTCAGCT
TGCATTAAAGATGAAGAAAAAAGTTTTCTATGTTTCCGGTGAAGAAAGTGCTTCTCAGATCAAAATGAGAGCCGACCGAT
TGGCTGATGTGAAAAACCCAAACTGTTTTCTGTACACCGAAACTTCATTAGAAAAAATTCTTCACGAAGCTAAAAAATTG
GAGCCGGATTTTGTCATTATTGATTCTATTCAAACTCTGCAGTCACAGCTTATCGAAAGTTCACCGGGAACGGTTTCGCA
AATCCGTGAATGTTCTAATGAAATCATTAAATATGCTAAAGAATATAATGTTCCTGTCTTCCTAGTCGGTCACATTACAA
AAGACGGACAAATTGCCGGTCCGAAAGTTTTGGAACATATGGTCGATGTAGTTTTGAATTTTGACGGAGACAGAAATCAC
CTTTTCAGATTATTGAGAGCCAATAAAAACCGTTTCGGATCAACCGCGGAAATCGGAATTTACGAAATGGTATCGCAAGG
TTTAAAGGAAATAAAAAACCCTTCAGAAATTTTAATCACTAAAAAATTCGAAGAACTTTCCGGAAATTCTGTCGCAGTAA
CTTTAGAAGGAAACCGACCAATGCTTCTGGAAATTCAGGCTTTGGTAAGTACCGCAGTTTACGGAACTCCACAAAGAAGC
TCTACTGGTTTCGATTCTAAAAGACTAAACATGCTTTTGGCGGTTCTTGAAAAAAGAGCAGGTTTTCAACTCGGCGCAAA
AGATGTTTTCTTAAATATTACCGGAGGAATAAAAACCGATGATCCTGCTTTGGATTTGGCGGTTGTCGCATCTATTCTTT
CATCAAATGAAGATATTGCGATTTCAGAACATTATTGCTTTGCAGGAGAAATCGGTTTAAGCGGAGAAATTCGGCCGATT
GCACAAGCAGAACAAAGAATAACTGAAGCTGAAAAATTAGGCTATGAAAAAATTTTTATTTCAAATTTAAATAAACTTCC
GAAGAAAAAATTCGGAATCAAGATTGAAGAAGTAAGTAAGGTTGAAGATTTTCATGAACGGCTGTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-422)

AAA domain (AAA_25)

(67-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.115

100

0.494
  radA Streptococcus mitis NCTC 12261

47.817

100

0.488
  radA Streptococcus pneumoniae D39

47.598

100

0.486
  radA Streptococcus pneumoniae TIGR4

47.598

100

0.486
  radA Streptococcus pneumoniae R6

47.598

100

0.486
  radA Streptococcus pneumoniae Rx1

47.598

100

0.486
  radA Streptococcus mitis SK321

49.882

94.655

0.472