Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   QVN10_RS11370 Genome accession   NZ_CP128875
Coordinates   2369716..2370963 (+) Length   415 a.a.
NCBI ID   WP_001161857.1    Uniprot ID   -
Organism   Escherichia coli strain TUM14771     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2364716..2375963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN10_RS11355 (QVN10_11355) - 2365231..2366907 (+) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -
  QVN10_RS11360 (QVN10_11360) kdsB 2366917..2367657 (+) 741 WP_001445841.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QVN10_RS11365 (QVN10_11365) - 2367654..2369681 (+) 2028 WP_000579530.1 capsular polysaccharide biosynthesis protein -
  QVN10_RS11370 (QVN10_11370) kpsS 2369716..2370963 (+) 1248 WP_001161857.1 capsular biosynthesis protein Regulator
  QVN10_RS11375 (QVN10_11375) - 2371072..2372664 (-) 1593 WP_289902662.1 WcbI family polysaccharide biosynthesis putative acetyltransferase -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 49470.89 Da        Isoelectric Point: 10.0440

>NTDB_id=775423 QVN10_RS11370 WP_001161857.1 2369716..2370963(+) (kpsS) [Escherichia coli strain TUM14771]
MQGNALTVLLSGKKYLLLQGPMGTFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFARYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGRVSIGEKNRY
ESDYSYYSKKPHHND

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=775423 QVN10_RS11370 WP_001161857.1 2369716..2370963(+) (kpsS) [Escherichia coli strain TUM14771]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGAACCTTTTTCAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGTCGTAACGCTGTGAATGTAGTATTCAACGGCGGGGATCGTTTTTACTGCC
GTCATCGACAATACCTGGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGACAATATGAC
TTTGACACTATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGGTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCAATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCGCTCGCTACCGCCACCACAA
ATCATTTTCCCCGTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGTCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATATACGTGCACGATCTCCCGATGCCGGAACTATTACGCCATGCTAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTATGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATGGGAGAGTAAGCATTGGAGAAAAAAATAGGTAT
GAAAGTGATTACTCCTATTATTCAAAGAAACCACATCATAATGACTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

93.735

0.373