Detailed information NTG0775419

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QVN10_RS10055
• Genome accession: NZ_CP128875
• Coordinates: 2092888..2093880 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TUM14771
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2087888..2098880

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVN10_RS10030 (QVN10_10030)	ygbN	2088544..2089908 (+)	1365	WP_000104455.1	GntP family transporter	-
QVN10_RS10035 (QVN10_10035)	-	2089947..2090183 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QVN10_RS10040 (QVN10_10040)	-	2090194..2091621 (-)	1428	WP_000863190.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QVN10_RS10045 (QVN10_10045)	-	2091621..2092214 (-)	594	WP_000767723.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QVN10_RS10050 (QVN10_10050)	-	2092361..2092768 (+)	408	WP_001208077.1	MarR family transcriptional regulator	-
QVN10_RS10055 (QVN10_10055)	rpoS	2092888..2093880 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QVN10_RS10060 (QVN10_10060)	nlpD	2093943..2095037 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QVN10_RS10065 (QVN10_10065)	pcm	2095222..2095848 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QVN10_RS10070 (QVN10_10070)	surE	2095842..2096603 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QVN10_RS10075 (QVN10_10075)	truD	2096584..2097633 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
QVN10_RS10080 (QVN10_10080)	ispF	2097630..2098109 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QVN10_RS10085 (QVN10_10085)	ispD	2098109..2098819 (-)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=775419 QVN10_RS10055 WP_000081550.1 2092888..2093880(-) (rpoS) [Escherichia coli strain TUM14771]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=775419 QVN10_RS10055 WP_000081550.1 2092888..2093880(-) (rpoS) [Escherichia coli strain TUM14771]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCTATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACATTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715