Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QVN10_RS00465 Genome accession   NZ_CP128875
Coordinates   99706..100335 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain TUM14771     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 94706..105335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN10_RS00445 (QVN10_00445) ycbZ 95096..96856 (-) 1761 WP_000156476.1 Lon protease family protein -
  QVN10_RS00450 (QVN10_00450) matP 97042..97494 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QVN10_RS00455 (QVN10_00455) ompA 97569..98621 (-) 1053 WP_000750418.1 porin OmpA -
  QVN10_RS00460 (QVN10_00460) sulA 98978..99487 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QVN10_RS00465 (QVN10_00465) sxy/tfoX 99706..100335 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QVN10_RS00470 (QVN10_00470) yccS 100298..102460 (-) 2163 WP_000875041.1 YccS family putative transporter -
  QVN10_RS00475 (QVN10_00475) yccF 102470..102916 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QVN10_RS00480 (QVN10_00480) helD 103039..105093 (+) 2055 WP_289404706.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=775393 QVN10_RS00465 WP_000839153.1 99706..100335(+) (sxy/tfoX) [Escherichia coli strain TUM14771]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=775393 QVN10_RS00465 WP_000839153.1 99706..100335(+) (sxy/tfoX) [Escherichia coli strain TUM14771]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1