Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PEZ80_RS06345 Genome accession   NZ_CP116026
Coordinates   1346551..1348224 (+) Length   557 a.a.
NCBI ID   WP_271292604.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain CQFYY22-063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1341551..1353224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PEZ80_RS06315 (PEZ80_06315) - 1341871..1342722 (+) 852 WP_271292601.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  PEZ80_RS06320 (PEZ80_06320) xseA 1342723..1344075 (+) 1353 WP_271292602.1 exodeoxyribonuclease VII large subunit -
  PEZ80_RS06325 (PEZ80_06325) - 1344056..1344277 (+) 222 WP_005225774.1 exodeoxyribonuclease VII small subunit -
  PEZ80_RS06330 (PEZ80_06330) - 1344274..1345170 (+) 897 WP_271292603.1 polyprenyl synthetase family protein -
  PEZ80_RS06335 (PEZ80_06335) - 1345167..1345988 (+) 822 WP_005225776.1 TlyA family RNA methyltransferase -
  PEZ80_RS06340 (PEZ80_06340) argR 1346086..1346535 (+) 450 WP_005225777.1 arginine repressor -
  PEZ80_RS06345 (PEZ80_06345) recN 1346551..1348224 (+) 1674 WP_271292604.1 DNA repair protein RecN Machinery gene
  PEZ80_RS06350 (PEZ80_06350) - 1348320..1349051 (+) 732 WP_271292605.1 alpha/beta hydrolase -
  PEZ80_RS06355 (PEZ80_06355) - 1349452..1350306 (+) 855 WP_015509511.1 phosphate ABC transporter substrate-binding protein PstS -
  PEZ80_RS06360 (PEZ80_06360) pstC 1350404..1351324 (+) 921 WP_271292606.1 phosphate ABC transporter permease subunit PstC -
  PEZ80_RS06365 (PEZ80_06365) pstA 1351324..1352208 (+) 885 WP_005225782.1 phosphate ABC transporter permease PstA -
  PEZ80_RS06370 (PEZ80_06370) pstB 1352222..1353028 (+) 807 WP_270274026.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62635.79 Da        Isoelectric Point: 4.5175

>NTDB_id=775384 PEZ80_RS06345 WP_271292604.1 1346551..1348224(+) (recN) [Enterococcus casseliflavus strain CQFYY22-063]
MLLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSSDYLRQGAEKCRLEGIFEWPNQQEFKELT
ADLGIDEEEVLIVQRDISQSGKTICRVNGRTVTLSVLRQIGLFLVDIQGQNEHQELLQPEKHLALMDGFGDDAFKAELAS
YRQAYQAYRFLEKHVRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEEQLIDEREKLTNYQKIVDALGQSYGALSAEE
VNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYYLLQDAATDISRQVDNLELDEGRLEEVISRLETIRQLKRKYGESI
PVILAYYDEISKEISESAYTEGQLEQLEEELAQKAEAVWQLAEALHVKRRELAHRLEKEIVQELKELYMEHAQFEVRFAS
GSKQLSSSGFDTVEFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKIAK
IAANSQVLCITHLPQVAAVADNQYFIEKAIQEGRTETHVRKLSEEERVAEIARMLSGAEITDLTIEHARELLALAHR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=775384 PEZ80_RS06345 WP_271292604.1 1346551..1348224(+) (recN) [Enterococcus casseliflavus strain CQFYY22-063]
ATGCTTTTAGAATTGTCGATCCAAAATTTTGCGATTATCTCCAACCTGCACCTGTCTTTTCATGAGGGAATGACGGCTCT
AACAGGTGAAACAGGTGCTGGGAAATCAATCATTATCGATGCGATGGGCTTACTAGCAGGTGGCAGAGGATCCAGTGACT
ATTTGCGTCAAGGCGCAGAAAAATGCCGTTTGGAAGGGATTTTTGAATGGCCGAATCAGCAGGAGTTCAAAGAGCTGACC
GCAGATCTGGGTATTGATGAAGAGGAAGTTCTGATCGTGCAACGGGATATCTCTCAATCGGGTAAAACTATTTGTCGTGT
TAATGGTCGAACTGTTACCTTGTCGGTTTTGCGCCAAATCGGCTTGTTTTTAGTTGATATCCAAGGACAAAATGAGCATC
AAGAACTGCTGCAGCCAGAAAAACATTTGGCGTTGATGGATGGTTTTGGAGATGATGCCTTTAAAGCGGAACTTGCAAGT
TACCGTCAAGCCTATCAAGCCTATCGCTTCTTAGAAAAACATGTGCGGACCATTCAAGAAAATGAGCAGCTCTATGTGCA
GCGAATGGACATGCTGCGTTTTCAACAAGAAGAGATCGCCCAAGCGGAATTGATGGAAAATGAAGAAGAGCAGCTGATCG
ATGAACGAGAAAAACTGACCAATTATCAAAAAATCGTGGATGCTCTAGGGCAAAGCTATGGCGCTCTATCCGCCGAAGAA
GTTAATAGCCTAGATGGAGTCAGTGTGGCATTATCAGAGATCCAGTCGATCGCCCATCTTGATCCCGCGTATGAAAAAAT
CAGTGAAGCGATTCAAAGTGCGTATTACTTGTTGCAAGATGCAGCCACTGATATTTCGCGGCAAGTCGACAACCTTGAAT
TAGATGAAGGCCGACTGGAAGAAGTCATTTCACGGCTGGAAACGATTCGTCAATTGAAGCGCAAATACGGGGAGTCAATT
CCTGTGATTCTTGCTTATTATGACGAGATCAGCAAAGAAATCAGCGAATCAGCCTATACGGAAGGTCAGTTGGAGCAATT
AGAAGAAGAGCTTGCCCAAAAAGCTGAAGCAGTTTGGCAGCTGGCGGAAGCCTTGCACGTCAAACGACGTGAATTGGCTC
ATCGTTTAGAAAAAGAAATCGTTCAAGAGTTAAAAGAGCTGTATATGGAGCACGCGCAATTTGAAGTACGGTTTGCATCT
GGCTCAAAACAATTAAGCAGCAGCGGCTTTGATACCGTGGAGTTTTATTTGACCACCAACCCCGGTGAAGGCATGAAACC
GTTAGTGCGAGTTGCTTCTGGAGGAGAGCTTTCTCGGATCTTATTAGCGCTTAAATCGATTTTCTCCCGCAAGCAAGGAA
TCACTAGTATTGTCTTTGATGAGGTGGATACTGGGGTCAGTGGCCGAGTAGCTCAGGCGATCGCCGAAAAAATCGCCAAG
ATCGCTGCGAATTCGCAAGTCTTGTGTATCACCCACTTGCCGCAAGTAGCGGCTGTGGCGGACAATCAATATTTTATCGA
AAAAGCAATTCAAGAAGGTCGGACAGAAACCCATGTCCGTAAATTATCAGAAGAAGAACGAGTGGCTGAGATCGCCCGTA
TGCTCTCAGGTGCAGAAATCACCGATTTAACGATTGAACATGCACGAGAACTATTGGCGCTGGCTCACCGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.719

100

0.488