Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QU579_RS14575 Genome accession   NZ_CP128803
Coordinates   3162934..3163791 (-) Length   285 a.a.
NCBI ID   WP_005496771.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3157934..3168791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS14550 (QU579_14790) - 3158286..3159038 (-) 753 WP_140151402.1 inovirus Gp2 family protein -
  QU579_RS14555 (QU579_14795) - 3159100..3159744 (-) 645 WP_000042050.1 inovirus Gp2 family protein -
  QU579_RS14560 (QU579_14800) - 3160156..3161043 (+) 888 WP_140184815.1 hypothetical protein -
  QU579_RS14565 (QU579_14805) - 3161503..3161928 (-) 426 WP_005458957.1 phosphate-starvation-inducible protein PsiE -
  QU579_RS14570 (QU579_14810) - 3162058..3162897 (-) 840 WP_005458953.1 ABC transporter ATP-binding protein -
  QU579_RS14575 (QU579_14815) amiE 3162934..3163791 (-) 858 WP_005496771.1 ABC transporter ATP-binding protein Regulator
  QU579_RS14580 (QU579_14820) - 3163801..3165627 (-) 1827 WP_029855762.1 extracellular solute-binding protein -
  QU579_RS14585 (QU579_14825) - 3165666..3166709 (-) 1044 WP_029806600.1 ABC transporter permease -
  QU579_RS14590 (QU579_14830) - 3166711..3167736 (-) 1026 WP_005458995.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31594.65 Da        Isoelectric Point: 4.4929

>NTDB_id=775382 QU579_RS14575 WP_005496771.1 3162934..3163791(-) (amiE) [Vibrio parahaemolyticus strain NJIFDCVp52]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=775382 QU579_RS14575 WP_005496771.1 3162934..3163791(-) (amiE) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGATCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGCGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCAA
TGTCCATCATGGGACTGTTGCCAAAGCCTTACGGCAATATTGTCAATGGTGAAGTTAACTACCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGCTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGTTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCGCACAACCTATCT
GGTGGTATGCGCCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGATATCTTGATTTGTGATGAGCCAACGAC
GGCACTGGATGTAACGGTACAGGCGTCTATCCTTGAACTAATGAATGAACTTCAAGAAGAAACGGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTAGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGTTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCGAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361