Detailed information NTG0775351

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: QU579_RS08935
• Genome accession: NZ_CP128803
• Coordinates: 1944656..1945636 (+)
• Length: 326 a.a.
• NCBI ID: WP_029857315.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain NJIFDCVp52
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1939656..1950636

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QU579_RS08915 (QU579_09155)	-	1940013..1941623 (+)	1611	WP_029857317.1	peptide ABC transporter substrate-binding protein	-
QU579_RS08920 (QU579_09160)	oppB	1941790..1942710 (+)	921	WP_005454907.1	oligopeptide ABC transporter permease OppB	-
QU579_RS08925 (QU579_09165)	-	1942720..1943652 (+)	933	WP_005495445.1	ABC transporter permease subunit	-
QU579_RS08930 (QU579_09170)	-	1943663..1944646 (+)	984	WP_029857316.1	ABC transporter ATP-binding protein	-
QU579_RS08935 (QU579_09175)	amiE	1944656..1945636 (+)	981	WP_029857315.1	oligopeptide/dipeptide ABC transporter ATP-binding protein	Regulator
QU579_RS08940 (QU579_09180)	-	1945646..1947442 (+)	1797	WP_029857313.1	aminopeptidase P family protein	-
QU579_RS08945 (QU579_09185)	-	1947695..1950139 (-)	2445	WP_342821099.1	collagenase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 36452.29 Da
• Isoelectric Point: 8.3113

>NTDB_id=775351 QU579_RS08935 WP_029857315.1 1944656..1945636(+) (amiE) [Vibrio parahaemolyticus strain NJIFDCVp52]
MNQKEVLLSARELQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVMCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide

• Length: 981 bp

>NTDB_id=775351 QU579_RS08935 WP_029857315.1 1944656..1945636(+) (amiE) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGAATCAGAAAGAAGTGTTATTGTCTGCTCGCGAACTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGCAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCACGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGCGCCTTAATCCTCAATCCGGACTTGGTGATGTGTGATGAACCCGTCAG
CGCATTGGATGTTTCGATTCAAGCACAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCACATGACCTGAGCGTTGTGCGTCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCTTCTCCGCTCAACCCACCCAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (238-305)

• ABC transporter (ABC_tran) (35-186)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus thermophilus LMG 18311	40.193	95.399	0.383
amiE	Streptococcus thermophilus LMD-9	40.193	95.399	0.383
amiF	Streptococcus salivarius strain HSISS4	45.091	84.356	0.38
amiF	Streptococcus thermophilus LMG 18311	45.055	83.742	0.377
amiF	Streptococcus thermophilus LMD-9	45.055	83.742	0.377
amiE	Streptococcus salivarius strain HSISS4	39.423	95.706	0.377
oppD	Streptococcus mutans UA159	38.019	96.012	0.365