Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QU579_RS08205 Genome accession   NZ_CP128803
Coordinates   1761356..1762900 (+) Length   514 a.a.
NCBI ID   WP_005455006.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1756356..1767900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS08180 (QU579_08425) - 1756657..1756977 (+) 321 WP_005454817.1 STAS domain-containing protein -
  QU579_RS08185 (QU579_08430) - 1757004..1757906 (+) 903 WP_342821242.1 OmpA family protein -
  QU579_RS08190 (QU579_08435) - 1757939..1760005 (+) 2067 WP_049877691.1 SLBB domain-containing protein -
  QU579_RS08195 (QU579_08440) - 1760005..1760691 (+) 687 WP_005454821.1 CpsD/CapB family tyrosine-protein kinase -
  QU579_RS08200 (QU579_08445) - 1760704..1761084 (+) 381 WP_025533201.1 Hpt domain-containing protein -
  QU579_RS08205 (QU579_08450) luxO 1761356..1762900 (+) 1545 WP_005455006.1 sigma-54 dependent transcriptional regulator Regulator
  QU579_RS08210 (QU579_08455) - 1762875..1763945 (+) 1071 WP_053305157.1 glycosyltransferase family 4 protein -
  QU579_RS08215 (QU579_08460) - 1764096..1765280 (+) 1185 WP_025555948.1 glycosyltransferase -
  QU579_RS08220 (QU579_08465) - 1765291..1766463 (+) 1173 WP_222133744.1 glycosyltransferase family 4 protein -
  QU579_RS08225 (QU579_08470) - 1766456..1767886 (+) 1431 WP_180758074.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57403.25 Da        Isoelectric Point: 5.8567

>NTDB_id=775349 QU579_RS08205 WP_005455006.1 1761356..1762900(+) (luxO) [Vibrio parahaemolyticus strain NJIFDCVp52]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAMQTPPIEPVQPVQEAPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=775349 QU579_RS08205 WP_005455006.1 1761356..1762900(+) (luxO) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGAGACCAAGGGTGTTATTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAACCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCGATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGTAGCGTCGACTTAGCAGTAAACTTGATTCAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCAGTGGCACTGCATCTTAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTGGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGAGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTGGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACAAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAGGTGGAAGAAGGAC
GCTTCCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATT
GTCACGTTAGCCAAGCATTTTCTAACAACTTACGCCAAAGAGGACAAGAAAAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGTAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACCACCCATTGAACCAGT
GCAACCTGTTCAAGAGGCGCCTGCTCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.098

97.082

0.477