Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QU579_RS04900 Genome accession   NZ_CP128803
Coordinates   1045061..1045660 (+) Length   199 a.a.
NCBI ID   WP_025548530.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1040061..1050660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS04875 (QU579_04880) - 1041212..1041343 (+) 132 WP_005380608.1 hypothetical protein -
  QU579_RS04880 (QU579_04885) - 1041416..1041763 (+) 348 WP_023585236.1 YbaN family protein -
  QU579_RS04885 (QU579_04890) apt 1041929..1042474 (+) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  QU579_RS04890 (QU579_04895) dnaX 1042483..1044618 (+) 2136 WP_025630593.1 DNA polymerase III subunit gamma/tau -
  QU579_RS04895 (QU579_04900) - 1044701..1045030 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  QU579_RS04900 (QU579_04905) recR 1045061..1045660 (+) 600 WP_025548530.1 recombination mediator RecR Machinery gene
  QU579_RS04905 (QU579_04910) aqpZ 1045712..1046410 (-) 699 WP_005460095.1 aquaporin Z -
  QU579_RS04910 (QU579_04915) - 1046617..1047876 (-) 1260 WP_005494432.1 amino acid permease -
  QU579_RS04915 (QU579_04920) - 1048194..1048574 (+) 381 WP_025546300.1 RidA family protein -
  QU579_RS04920 (QU579_04925) - 1048590..1049867 (+) 1278 WP_025546301.1 serine dehydratase subunit alpha family protein -
  QU579_RS04925 (QU579_04930) - 1049896..1050555 (+) 660 WP_005397228.1 transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21681.68 Da        Isoelectric Point: 5.7468

>NTDB_id=775337 QU579_RS04900 WP_025548530.1 1045061..1045660(+) (recR) [Vibrio parahaemolyticus strain NJIFDCVp52]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICANPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDVSEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=775337 QU579_RS04900 WP_025548530.1 1045061..1045660(+) (recR) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTGCTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCGGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATGTTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAAGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTCGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

100

0.452
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

100

0.437