Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   PGA57_RS10000 Genome accession   NZ_CP116016
Coordinates   175208..175915 (-) Length   235 a.a.
NCBI ID   WP_080563403.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain SRCM217410     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 170208..180915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGA57_RS00880 (PGA57_00880) rpoC 171494..175135 (+) 3642 WP_004270200.1 DNA-directed RNA polymerase subunit beta' -
  PGA57_RS10000 comC 175208..175915 (-) 708 WP_080563403.1 prepilin peptidase Machinery gene
  PGA57_RS00890 (PGA57_00890) rpsL 176186..176599 (+) 414 WP_004270179.1 30S ribosomal protein S12 -
  PGA57_RS00895 (PGA57_00895) rpsG 176689..177159 (+) 471 WP_004270185.1 30S ribosomal protein S7 -
  PGA57_RS00900 (PGA57_00900) fusA 177251..179338 (+) 2088 WP_146955092.1 elongation factor G -
  PGA57_RS00905 (PGA57_00905) rsgA 179983..180456 (-) 474 WP_081326585.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26572.90 Da        Isoelectric Point: 6.9137

>NTDB_id=775336 PGA57_RS10000 WP_080563403.1 175208..175915(-) (comC) [Latilactobacillus curvatus strain SRCM217410]
MTRLLIYFLTFVIGACCASFLTVCAWRWPLGLSITWPGSRCDFCHHALAWYDLCPIISYLILRGHCRYCDTRIQHHFFTS
EVIGGLLACCLASQYFTPQIGYLLLILYLLSLVDIFHTALYPVPMVLAFMPLFIDYWPTNHWLSALLIGSTLSVINYFSD
GIGTGDIELLAILGLWFGLEVTLSMLLIACLLCLIKYLIDSLHHPVVLALVGRRPIPFVPYISYGVLIVLFIVNT

Nucleotide


Download         Length: 708 bp        

>NTDB_id=775336 PGA57_RS10000 WP_080563403.1 175208..175915(-) (comC) [Latilactobacillus curvatus strain SRCM217410]
ATGACACGTTTGTTAATATATTTTTTAACCTTTGTTATTGGCGCGTGTTGCGCCTCTTTTTTAACTGTTTGTGCTTGGCG
TTGGCCACTTGGTTTATCCATCACATGGCCTGGTTCACGGTGTGACTTCTGCCATCACGCCCTCGCTTGGTACGACTTAT
GTCCAATTATCAGTTACCTCATTCTCAGAGGGCACTGCCGCTATTGTGATACTCGAATCCAGCACCATTTTTTTACTAGT
GAGGTTATTGGCGGCTTGTTAGCGTGTTGTTTAGCCAGTCAATATTTCACACCACAGATTGGCTATTTATTGCTTATCCT
TTATTTGTTGAGCCTAGTCGATATTTTCCATACAGCTCTATACCCAGTTCCAATGGTACTGGCTTTTATGCCTTTGTTTA
TTGACTACTGGCCGACAAACCATTGGCTCAGTGCCCTATTGATTGGCAGCACCTTATCTGTCATCAACTACTTTTCAGAT
GGCATCGGTACTGGTGACATTGAATTATTGGCAATTCTTGGGTTGTGGTTTGGATTGGAGGTCACCCTATCCATGTTATT
AATTGCCTGTCTCCTCTGTTTAATCAAATATCTCATTGATAGTCTCCACCATCCAGTTGTCCTCGCCTTAGTCGGACGCC
GCCCAATTCCATTTGTCCCATATATCAGCTACGGTGTCTTAATCGTTTTGTTTATTGTAAACACATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(12-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

50.661

96.596

0.489