Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PGA57_RS08825 Genome accession   NZ_CP116016
Coordinates   1684094..1685902 (+) Length   602 a.a.
NCBI ID   WP_069468444.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain SRCM217410     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1679094..1690902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGA57_RS08815 (PGA57_08815) - 1681272..1682510 (-) 1239 WP_080752751.1 NupC/NupG family nucleoside CNT transporter -
  PGA57_RS08820 (PGA57_08820) - 1682689..1683897 (-) 1209 WP_081303817.1 LCP family protein -
  PGA57_RS08825 (PGA57_08825) pepF 1684094..1685902 (+) 1809 WP_069468444.1 oligoendopeptidase F Regulator
  PGA57_RS08830 (PGA57_08830) - 1685943..1686719 (-) 777 WP_039098355.1 metal ABC transporter permease -
  PGA57_RS08835 (PGA57_08835) - 1686754..1687434 (-) 681 WP_004265149.1 metal ABC transporter ATP-binding protein -
  PGA57_RS08840 (PGA57_08840) - 1687431..1688318 (-) 888 WP_039098315.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  PGA57_RS08845 (PGA57_08845) - 1688592..1689170 (-) 579 WP_039098314.1 hypothetical protein -
  PGA57_RS08850 (PGA57_08850) - 1689276..1690817 (-) 1542 WP_065825206.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67359.46 Da        Isoelectric Point: 4.6609

>NTDB_id=775333 PGA57_RS08825 WP_069468444.1 1684094..1685902(+) (pepF) [Latilactobacillus curvatus strain SRCM217410]
MSTQQLPTRDAVPEKLTWDLTTIFKNDAAFEVAFKKVKTQLPTLKTLDRPFESADQLVATIKQILATFRQLEIIYVYASM
KNDQDTANATYQGYQAQVDSLAAEVSAAAAFLDPAILAIPIVQLTTWLSESPALAKYSHFIQTITDSRDHVLSGQEEALL
AAAGDIFSAASQTFSVLDNSDLQFPEVTDENGQTFQLSDGVYSQLLQSANRSVRQAAFEALYKTYGQFKNTFATTLATEI
KGHNYLAQVHHYDSARQAALAPKAIPEAVYTTLVDQVNQHLPLLHRYTELRKKQLNLSELHMFDLYTPLLGKPALTYTYE
QAQATAKEALSILGPDYAKQVAHIFDDRLIDVCENQGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSAF
TRQTQDYVYGDYPIFVAEIASTTNENLLTEYLLQTQSDPKIQAYLLNYYLDGFKGTVFRQTQFAEFEHAMHAAAANGQPL
TAEFMSQQYADINSRYYGPAVVNDPQIALEWTRIPHFYMNYYVYQYATGFAAATTLANGISTKQPGALDHYLDYLKAGSS
AYPIEIMQQAGVDMTSADYLERAFAVFEERLDQLEALLANLN

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=775333 PGA57_RS08825 WP_069468444.1 1684094..1685902(+) (pepF) [Latilactobacillus curvatus strain SRCM217410]
ATGTCAACTCAACAACTCCCCACCCGCGATGCTGTTCCAGAAAAGCTCACATGGGACTTAACCACGATTTTCAAAAATGA
TGCAGCTTTTGAAGTAGCCTTTAAGAAAGTTAAAACGCAATTACCCACACTCAAAACACTTGATCGTCCGTTTGAATCGG
CTGATCAATTAGTCGCTACAATCAAACAAATCTTAGCCACTTTCCGCCAACTCGAAATAATTTACGTTTATGCTAGCATG
AAAAATGATCAGGATACTGCTAACGCAACTTATCAAGGCTATCAAGCCCAAGTGGACAGCTTAGCGGCCGAAGTTTCAGC
CGCCGCTGCTTTCTTAGACCCTGCGATTCTCGCAATTCCTATTGTTCAATTGACCACTTGGTTGTCAGAATCCCCTGCTT
TAGCCAAATACAGCCATTTCATTCAAACCATTACCGATAGTCGAGACCATGTCTTATCTGGGCAAGAAGAAGCCTTGTTA
GCTGCTGCCGGTGATATCTTCAGTGCTGCTAGTCAAACCTTCAGCGTCTTAGACAACTCGGATTTACAATTCCCAGAAGT
GACTGACGAAAACGGACAAACGTTTCAGCTTTCAGACGGGGTCTACAGCCAACTTTTGCAATCAGCCAACCGATCAGTCC
GCCAAGCAGCCTTCGAAGCACTTTACAAAACTTATGGTCAATTCAAAAATACATTTGCGACGACGCTTGCCACTGAAATC
AAAGGTCATAATTACTTAGCTCAAGTCCATCACTACGATAGTGCACGCCAAGCAGCGCTAGCACCCAAAGCAATTCCAGA
AGCCGTCTATACAACCTTGGTTGATCAAGTGAACCAACACTTACCACTTTTACATCGCTATACTGAATTACGCAAAAAGC
AACTTAATTTATCTGAATTACACATGTTTGATCTCTACACACCACTTTTAGGAAAACCCGCATTAACCTACACTTATGAG
CAGGCGCAAGCAACTGCCAAAGAAGCATTGTCGATCCTAGGACCCGATTACGCCAAACAAGTTGCCCATATTTTTGATGA
CCGCTTAATCGATGTTTGTGAAAACCAAGGGAAACGGAGTGGCGCCTATTCTGGCGGCGCTTATGACACCAACCCCTTCA
TTTTATTAAACTGGCAAGATGATTTAAACAACTTATACACGTTGGTCCATGAAACGGGGCATAGTGTCCACAGCGCCTTC
ACCCGTCAGACCCAAGATTATGTTTATGGCGACTATCCAATTTTCGTGGCCGAAATTGCGTCAACAACCAATGAAAATCT
CTTAACGGAATATTTATTGCAAACACAGTCTGATCCTAAGATCCAGGCCTATCTACTAAACTACTATTTGGATGGTTTTA
AAGGCACTGTTTTCCGTCAAACGCAATTCGCTGAGTTCGAACATGCGATGCATGCTGCCGCTGCCAATGGTCAGCCACTA
ACTGCCGAGTTCATGTCACAACAATATGCGGACATTAATAGCCGCTACTACGGACCTGCCGTCGTTAACGATCCACAGAT
TGCCCTTGAATGGACTCGGATTCCACATTTCTACATGAACTATTATGTTTACCAATACGCAACCGGCTTTGCTGCTGCAA
CGACTCTCGCTAACGGTATTAGCACCAAACAGCCCGGTGCTCTCGATCACTATTTAGACTACCTAAAAGCTGGGAGCTCC
GCCTACCCAATTGAAATTATGCAACAAGCCGGCGTCGATATGACGAGTGCCGACTATCTCGAACGCGCTTTTGCAGTTTT
CGAAGAACGTCTGGATCAACTCGAAGCCCTACTTGCTAACCTAAATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-585)

Oligopeptidase F (Peptidase_M3_N)

(116-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.653

98.173

0.537