Detailed information NTG0775299

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: PF996_RS19545
• Genome accession: NZ_CP116014
• Coordinates: 3803701..3804846 (+)
• Length: 381 a.a.
• NCBI ID: WP_079978504.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain SRCM124633
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3798701..3809846

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF996_RS19525 (PF996_19525)	fnr	3799175..3799891 (-)	717	WP_017418713.1	fumarate/nitrate reduction transcriptional regulator Fnr	-
PF996_RS19530 (PF996_19530)	narK	3799989..3801179 (-)	1191	WP_257988656.1	nitrate transporter NarK	-
PF996_RS19535 (PF996_19535)	argS	3801314..3802984 (-)	1671	WP_257988657.1	arginine--tRNA ligase	-
PF996_RS19540 (PF996_19540)	-	3802981..3803409 (-)	429	WP_271265690.1	DUF1934 domain-containing protein	-
PF996_RS19545 (PF996_19545)	rapF	3803701..3804846 (+)	1146	WP_079978504.1	Rap family tetratricopeptide repeat protein	Regulator
PF996_RS19550 (PF996_19550)	-	3804830..3804949 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
PF996_RS19555 (PF996_19555)	speB	3805072..3805944 (-)	873	WP_003151054.1	agmatinase	-
PF996_RS19560 (PF996_19560)	speE	3806004..3806834 (-)	831	WP_017418706.1	spermidine synthase	-
PF996_RS19565 (PF996_19565)	-	3807034..3809106 (+)	2073	WP_271265691.1	transglycosylase domain-containing protein	-
PF996_RS19570 (PF996_19570)	-	3809131..3809562 (-)	432	WP_110085370.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45816.31 Da
• Isoelectric Point: 5.0722

>NTDB_id=775299 PF996_RS19545 WP_079978504.1 3803701..3804846(+) (rapF) [Bacillus velezensis strain SRCM124633]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYFIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=775299 PF996_RS19545 WP_079978504.1 3803701..3804846(+) (rapF) [Bacillus velezensis strain SRCM124633]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTCATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	69.816	100	0.698
rapC	Bacillus subtilis subsp. subtilis str. 168	53.684	99.738	0.535