Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   PF996_RS14710 Genome accession   NZ_CP116014
Coordinates   2857544..2858296 (-) Length   250 a.a.
NCBI ID   WP_017418284.1    Uniprot ID   A0AAP5QSZ3
Organism   Bacillus velezensis strain SRCM124633     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2852544..2863296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS14685 (PF996_14685) mreC 2852980..2853843 (-) 864 WP_016938781.1 rod shape-determining protein MreC -
  PF996_RS14690 (PF996_14690) mreB 2853874..2854887 (-) 1014 WP_106067926.1 cell shape-determining protein MreB -
  PF996_RS14695 (PF996_14695) radC 2854979..2855674 (-) 696 WP_007408165.1 RadC family protein -
  PF996_RS14700 (PF996_14700) - 2855706..2856275 (-) 570 WP_071181909.1 Maf family protein -
  PF996_RS14705 (PF996_14705) - 2856416..2857417 (-) 1002 WP_257988778.1 SPOR domain-containing protein -
  PF996_RS14710 (PF996_14710) comC 2857544..2858296 (-) 753 WP_017418284.1 prepilin peptidase Machinery gene
  PF996_RS14715 (PF996_14715) - 2858437..2859729 (-) 1293 WP_257988777.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  PF996_RS14720 (PF996_14720) - 2859788..2862430 (-) 2643 WP_104842712.1 valine--tRNA ligase -
  PF996_RS14725 (PF996_14725) - 2862883..2863074 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27260.00 Da        Isoelectric Point: 9.4293

>NTDB_id=775281 PF996_RS14710 WP_017418284.1 2857544..2858296(-) (comC) [Bacillus velezensis strain SRCM124633]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=775281 PF996_RS14710 WP_017418284.1 2857544..2858296(-) (comC) [Bacillus velezensis strain SRCM124633]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGTCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576