Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PF996_RS13560 Genome accession   NZ_CP116014
Coordinates   2655625..2656392 (-) Length   255 a.a.
NCBI ID   WP_014470678.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM124633     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2650625..2661392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS13540 (PF996_13540) - 2650828..2651640 (-) 813 WP_071181854.1 pyruvate, water dikinase regulatory protein -
  PF996_RS13545 (PF996_13545) ccpN 2651666..2652304 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  PF996_RS13550 (PF996_13550) glyS 2652404..2654443 (-) 2040 WP_257988708.1 glycine--tRNA ligase subunit beta -
  PF996_RS13555 (PF996_13555) glyQ 2654436..2655323 (-) 888 WP_106067886.1 glycine--tRNA ligase subunit alpha -
  PF996_RS13560 (PF996_13560) recO 2655625..2656392 (-) 768 WP_014470678.1 DNA repair protein RecO Machinery gene
  PF996_RS13565 (PF996_13565) - 2656429..2656572 (-) 144 WP_007408286.1 YqzL family protein -
  PF996_RS13570 (PF996_13570) era 2656727..2657632 (-) 906 WP_007408285.1 GTPase Era -
  PF996_RS13575 (PF996_13575) - 2657613..2658023 (-) 411 WP_003152976.1 cytidine deaminase -
  PF996_RS13580 (PF996_13580) - 2658147..2658521 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  PF996_RS13585 (PF996_13585) ybeY 2658502..2658975 (-) 474 WP_053284930.1 rRNA maturation RNase YbeY -
  PF996_RS13590 (PF996_13590) - 2658976..2661108 (-) 2133 WP_065180881.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29300.98 Da        Isoelectric Point: 9.0137

>NTDB_id=775274 PF996_RS13560 WP_014470678.1 2655625..2656392(-) (recO) [Bacillus velezensis strain SRCM124633]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSRDG
TFHFSVRDNGFICHRCFGKDPYKVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKHLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=775274 PF996_RS13560 WP_014470678.1 2655625..2656392(-) (recO) [Bacillus velezensis strain SRCM124633]
ATGCTGACAAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGAGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTTATGGCAAGAGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGACTTGTTTTTGACGGCATATGCCGCTTTTATCGCTGAACTTACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAAGGGACTGACCCGGACGTGATCACCTTCA
TCGTTCAGATGAAAATGCTCGGCGTCATGGGACTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCCGGGACGGG
ACGTTTCATTTTTCGGTAAGAGATAATGGTTTTATCTGCCACCGCTGCTTTGGAAAGGATCCGTACAAAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCATTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTTATCGATCTGTATTATGAGGAATATTCAGGGCTTTATTTAAAGTCTAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGCACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

90.196

100

0.902