Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PF996_RS11995 Genome accession   NZ_CP116014
Coordinates   2349233..2349841 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM124633     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2344233..2354841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS11955 (PF996_11955) - 2345286..2345792 (-) 507 WP_012117833.1 PTS sugar transporter subunit IIA -
  PF996_RS11960 (PF996_11960) - 2345931..2346344 (+) 414 WP_007612169.1 Hsp20/alpha crystallin family protein -
  PF996_RS11965 (PF996_11965) - 2346374..2346808 (-) 435 WP_076851378.1 YppG family protein -
  PF996_RS11970 (PF996_11970) - 2346995..2347177 (+) 183 WP_003153532.1 YppF family protein -
  PF996_RS11975 (PF996_11975) - 2347216..2347584 (-) 369 WP_003153529.1 YppE family protein -
  PF996_RS11980 (PF996_11980) - 2347630..2347875 (-) 246 WP_039063257.1 DUF5446 family protein -
  PF996_RS11985 (PF996_11985) sspM 2348081..2348185 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  PF996_RS11990 (PF996_11990) - 2348229..2349191 (-) 963 WP_063636681.1 DUF2515 domain-containing protein -
  PF996_RS11995 (PF996_11995) recU 2349233..2349841 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  PF996_RS12000 (PF996_12000) - 2349895..2352678 (+) 2784 WP_271265633.1 PBP1A family penicillin-binding protein -
  PF996_RS12005 (PF996_12005) - 2352756..2353247 (-) 492 WP_271265634.1 YpoC family protein -
  PF996_RS12010 (PF996_12010) nth 2353244..2353903 (-) 660 WP_007612187.1 endonuclease III -
  PF996_RS12015 (PF996_12015) dnaD 2353922..2354620 (-) 699 WP_017418023.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=775263 PF996_RS11995 WP_003153521.1 2349233..2349841(+) (recU) [Bacillus velezensis strain SRCM124633]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=775263 PF996_RS11995 WP_003153521.1 2349233..2349841(+) (recU) [Bacillus velezensis strain SRCM124633]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896