Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PF996_RS07565 Genome accession   NZ_CP116014
Coordinates   1448073..1448357 (+) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus velezensis strain SRCM124633     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1443073..1453357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS07545 (PF996_07545) - 1444317..1445225 (+) 909 WP_025649506.1 ketopantoate reductase family protein -
  PF996_RS07550 (PF996_07550) - 1445256..1446488 (-) 1233 WP_007409644.1 aminopeptidase -
  PF996_RS07555 (PF996_07555) - 1446589..1446723 (-) 135 WP_003154559.1 protein YkpC -
  PF996_RS07560 (PF996_07560) mreBH 1446795..1447802 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  PF996_RS07565 (PF996_07565) abrB 1448073..1448357 (+) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  PF996_RS07570 (PF996_07570) - 1448530..1449834 (+) 1305 WP_014417634.1 ATP-binding protein -
  PF996_RS07575 (PF996_07575) - 1449836..1450663 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase -
  PF996_RS07580 (PF996_07580) ktrC 1450704..1451369 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  PF996_RS07585 (PF996_07585) ade 1451518..1453251 (+) 1734 WP_063636615.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=775257 PF996_RS07565 WP_014417633.1 1448073..1448357(+) (abrB) [Bacillus velezensis strain SRCM124633]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=775257 PF996_RS07565 WP_014417633.1 1448073..1448357(+) (abrB) [Bacillus velezensis strain SRCM124633]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543