Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   PF996_RS07455 Genome accession   NZ_CP116014
Coordinates   1427572..1428168 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM124633     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1422572..1433168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS07425 (PF996_07425) - 1422786..1423241 (+) 456 WP_014417614.1 flavodoxin -
  PF996_RS07430 (PF996_07430) dapD 1423323..1424033 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  PF996_RS07435 (PF996_07435) - 1424104..1425228 (+) 1125 WP_063636606.1 N-acetyldiaminopimelate deacetylase -
  PF996_RS07440 (PF996_07440) - 1425289..1425534 (+) 246 WP_003154596.1 YkuS family protein -
  PF996_RS07445 (PF996_07445) - 1425568..1426374 (-) 807 WP_017417681.1 mechanosensitive ion channel family protein -
  PF996_RS07450 (PF996_07450) - 1426662..1427120 (+) 459 WP_017417682.1 TlpA disulfide reductase family protein -
  PF996_RS07455 (PF996_07455) rok 1427572..1428168 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  PF996_RS07460 (PF996_07460) - 1428189..1429181 (-) 993 WP_106067852.1 sporulation protein -
  PF996_RS07465 (PF996_07465) - 1429327..1429929 (+) 603 WP_224443617.1 molybdenum cofactor guanylyltransferase -
  PF996_RS07470 (PF996_07470) - 1429981..1431000 (+) 1020 WP_065180237.1 molybdopterin-synthase adenylyltransferase MoeB -
  PF996_RS07475 (PF996_07475) glp 1431018..1432310 (+) 1293 WP_014417621.1 gephyrin-like molybdotransferase Glp -
  PF996_RS07480 (PF996_07480) mobB 1432271..1432792 (+) 522 WP_224443618.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=775256 PF996_RS07455 WP_003154591.1 1427572..1428168(+) (rok) [Bacillus velezensis strain SRCM124633]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=775256 PF996_RS07455 WP_003154591.1 1427572..1428168(+) (rok) [Bacillus velezensis strain SRCM124633]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTAAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCGGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATATCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843