Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   PF996_RS07355 Genome accession   NZ_CP116014
Coordinates   1411707..1412171 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain SRCM124633     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1406707..1417171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS07335 (PF996_07335) - 1407187..1409007 (+) 1821 WP_017417673.1 PAS domain-containing protein -
  PF996_RS07340 (PF996_07340) - 1408983..1410202 (-) 1220 Protein_1386 aminotransferase A -
  PF996_RS07345 (PF996_07345) - 1410403..1410564 (-) 162 WP_007409608.1 hypothetical protein -
  PF996_RS07350 (PF996_07350) cheV 1410753..1411664 (+) 912 WP_025649511.1 chemotaxis protein CheV -
  PF996_RS07355 (PF996_07355) kre 1411707..1412171 (-) 465 WP_003154622.1 YkyB family protein Regulator
  PF996_RS07360 (PF996_07360) - 1412294..1413586 (-) 1293 WP_014417606.1 MFS transporter -
  PF996_RS07365 (PF996_07365) - 1413662..1414156 (-) 495 WP_263121370.1 L,D-transpeptidase family protein -
  PF996_RS07370 (PF996_07370) - 1414231..1415094 (-) 864 WP_022553417.1 metallophosphoesterase -
  PF996_RS07375 (PF996_07375) fadH 1415238..1416002 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  PF996_RS07380 (PF996_07380) - 1416116..1416664 (+) 549 WP_017417677.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=775255 PF996_RS07355 WP_003154622.1 1411707..1412171(-) (kre) [Bacillus velezensis strain SRCM124633]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=775255 PF996_RS07355 WP_003154622.1 1411707..1412171(-) (kre) [Bacillus velezensis strain SRCM124633]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929