Detailed information NTG0775244

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QUY19_RS05465
• Genome accession: NZ_CP128790
• Coordinates: 1118501..1119493 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WL7562
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1113501..1124493

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUY19_RS05435 (QUY19_05435)	ispD	1113562..1114272 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QUY19_RS05440 (QUY19_05440)	ispF	1114272..1114751 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QUY19_RS05445 (QUY19_05445)	truD	1114748..1115797 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QUY19_RS05450 (QUY19_05450)	surE	1115778..1116539 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QUY19_RS05455 (QUY19_05455)	pcm	1116533..1117159 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QUY19_RS05460 (QUY19_05460)	nlpD	1117344..1118438 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QUY19_RS05465 (QUY19_05465)	rpoS	1118501..1119493 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QUY19_RS05470 (QUY19_05470)	ygbN	1119587..1120951 (-)	1365	WP_000104441.1	GntP family transporter	-
QUY19_RS05475 (QUY19_05475)	ygbM	1121040..1121816 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QUY19_RS05480 (QUY19_05480)	ygbL	1121821..1122459 (-)	639	WP_001278994.1	aldolase	-
QUY19_RS05485 (QUY19_05485)	otnK	1122456..1123718 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=775244 QUY19_RS05465 WP_000081550.1 1118501..1119493(+) (rpoS) [Escherichia coli strain WL7562]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=775244 QUY19_RS05465 WP_000081550.1 1118501..1119493(+) (rpoS) [Escherichia coli strain WL7562]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715