Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PF996_RS02035 Genome accession   NZ_CP116014
Coordinates   412785..413738 (+) Length   317 a.a.
NCBI ID   WP_014416904.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM124633     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407785..418738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS02010 (PF996_02010) - 407829..409256 (+) 1428 WP_088056326.1 sensor histidine kinase -
  PF996_RS02015 (PF996_02015) rapC 409415..410563 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  PF996_RS02020 (PF996_02020) phrC 410547..410666 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  PF996_RS02025 (PF996_02025) - 410817..410927 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  PF996_RS02030 (PF996_02030) - 411007..412371 (-) 1365 WP_110085395.1 aspartate kinase -
  PF996_RS02035 (PF996_02035) ceuB 412785..413738 (+) 954 WP_014416904.1 ABC transporter permease Machinery gene
  PF996_RS02040 (PF996_02040) - 413728..414675 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  PF996_RS02045 (PF996_02045) - 414669..415427 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  PF996_RS02050 (PF996_02050) - 415449..416393 (+) 945 WP_063636990.1 siderophore ABC transporter substrate-binding protein -
  PF996_RS02055 (PF996_02055) - 416435..417859 (-) 1425 WP_015388705.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=775237 PF996_RS02035 WP_014416904.1 412785..413738(+) (ceuB) [Bacillus velezensis strain SRCM124633]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRLIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=775237 PF996_RS02035 WP_014416904.1 412785..413738(+) (ceuB) [Bacillus velezensis strain SRCM124633]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCAACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTTCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTTGTCAAAGGCAGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTCTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCCCACAC
CGCTCTCTTGGGCGCTGTTTTTGTACTGTTTTGCGACATTTTGGGAAGGTTGATCATTTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

99.685

0.539