Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   PF986_RS08495 Genome accession   NZ_CP116013
Coordinates   1793645..1794397 (-) Length   250 a.a.
NCBI ID   WP_260654631.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM124349     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1788645..1799397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF986_RS08470 (PF986_08470) mreC 1789081..1789944 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  PF986_RS08475 (PF986_08475) mreB 1789975..1790988 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  PF986_RS08480 (PF986_08480) radC 1791080..1791775 (-) 696 WP_007408165.1 RadC family protein -
  PF986_RS08485 (PF986_08485) - 1791807..1792376 (-) 570 WP_012118105.1 Maf family protein -
  PF986_RS08490 (PF986_08490) - 1792517..1793518 (-) 1002 WP_260654632.1 SPOR domain-containing protein -
  PF986_RS08495 (PF986_08495) comC 1793645..1794397 (-) 753 WP_260654631.1 prepilin peptidase Machinery gene
  PF986_RS08500 (PF986_08500) - 1794538..1795830 (-) 1293 WP_260654630.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  PF986_RS08505 (PF986_08505) - 1795889..1798531 (-) 2643 WP_017418286.1 valine--tRNA ligase -
  PF986_RS08510 (PF986_08510) - 1798984..1799175 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27231.95 Da        Isoelectric Point: 9.4293

>NTDB_id=775192 PF986_RS08495 WP_260654631.1 1793645..1794397(-) (comC) [Bacillus velezensis strain SRCM124349]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVASYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=775192 PF986_RS08495 WP_260654631.1 1793645..1794397(-) (comC) [Bacillus velezensis strain SRCM124349]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAACTTGTGCCCGTCGCTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576