Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PF986_RS07550 Genome accession   NZ_CP116013
Coordinates   1619633..1620400 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM124349     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1614633..1625400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF986_RS07530 (PF986_07530) - 1614836..1615648 (-) 813 WP_252052861.1 pyruvate, water dikinase regulatory protein -
  PF986_RS07535 (PF986_07535) ccpN 1615674..1616312 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  PF986_RS07540 (PF986_07540) glyS 1616412..1618451 (-) 2040 WP_260654655.1 glycine--tRNA ligase subunit beta -
  PF986_RS07545 (PF986_07545) glyQ 1618444..1619331 (-) 888 WP_016938921.1 glycine--tRNA ligase subunit alpha -
  PF986_RS07550 (PF986_07550) recO 1619633..1620400 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  PF986_RS07555 (PF986_07555) - 1620437..1620580 (-) 144 WP_007408286.1 YqzL family protein -
  PF986_RS07560 (PF986_07560) era 1620736..1621641 (-) 906 WP_007408285.1 GTPase Era -
  PF986_RS07565 (PF986_07565) - 1621622..1622032 (-) 411 WP_003152976.1 cytidine deaminase -
  PF986_RS07570 (PF986_07570) - 1622156..1622530 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  PF986_RS07575 (PF986_07575) ybeY 1622511..1622984 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  PF986_RS07580 (PF986_07580) - 1622985..1625117 (-) 2133 WP_025649836.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=775185 PF986_RS07550 WP_003152982.1 1619633..1620400(-) (recO) [Bacillus velezensis strain SRCM124349]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=775185 PF986_RS07550 WP_003152982.1 1619633..1620400(-) (recO) [Bacillus velezensis strain SRCM124349]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CGAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894