Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PF986_RS04125 Genome accession   NZ_CP116013
Coordinates   914320..914754 (+) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus velezensis strain SRCM124349     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 909320..919754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF986_RS04115 (PF986_04115) - 909751..912684 (+) 2934 Protein_818 beta-ketoacyl synthase N-terminal-like domain-containing protein -
  PF986_RS04120 (PF986_04120) - 912820..914031 (-) 1212 WP_025649439.1 cytochrome P450 family protein -
  PF986_RS04125 (PF986_04125) nucA/comI 914320..914754 (+) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PF986_RS04130 (PF986_04130) - 914814..915569 (+) 756 WP_110085565.1 YoaK family protein -
  PF986_RS04135 (PF986_04135) - 915603..915965 (-) 363 WP_007410383.1 hypothetical protein -
  PF986_RS04140 (PF986_04140) - 916157..917485 (-) 1329 WP_065180799.1 S8 family peptidase -
  PF986_RS04145 (PF986_04145) - 917664..917897 (+) 234 WP_015239897.1 hypothetical protein -
  PF986_RS04150 (PF986_04150) - 918154..918861 (+) 708 WP_110085566.1 poly-gamma-glutamate hydrolase family protein -
  PF986_RS04155 (PF986_04155) - 918921..919373 (+) 453 WP_014305039.1 OsmC family protein -
  PF986_RS04160 (PF986_04160) - 919411..919740 (-) 330 WP_032865393.1 DMT family transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=775173 PF986_RS04125 WP_007611576.1 914320..914754(+) (nucA/comI) [Bacillus velezensis strain SRCM124349]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=775173 PF986_RS04125 WP_007611576.1 914320..914754(+) (nucA/comI) [Bacillus velezensis strain SRCM124349]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATACT
CCGACGGCACGAGAGTACTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486