Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   PF986_RS02620 Genome accession   NZ_CP116013
Coordinates   558362..558958 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM124349     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 553362..563958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF986_RS02590 (PF986_02590) - 553576..554031 (+) 456 WP_014417614.1 flavodoxin -
  PF986_RS02595 (PF986_02595) dapD 554113..554823 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  PF986_RS02600 (PF986_02600) - 554894..556018 (+) 1125 WP_063636606.1 N-acetyldiaminopimelate deacetylase -
  PF986_RS02605 (PF986_02605) - 556079..556324 (+) 246 WP_003154596.1 YkuS family protein -
  PF986_RS02610 (PF986_02610) - 556358..557164 (-) 807 WP_025649509.1 mechanosensitive ion channel family protein -
  PF986_RS02615 (PF986_02615) - 557452..557910 (+) 459 WP_025649508.1 TlpA disulfide reductase family protein -
  PF986_RS02620 (PF986_02620) rok 558362..558958 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  PF986_RS02625 (PF986_02625) - 558979..559971 (-) 993 WP_014417619.1 hypothetical protein -
  PF986_RS02630 (PF986_02630) - 560117..560719 (+) 603 WP_025649507.1 molybdenum cofactor guanylyltransferase -
  PF986_RS02635 (PF986_02635) - 560771..561790 (+) 1020 WP_017417685.1 molybdopterin-synthase adenylyltransferase MoeB -
  PF986_RS02640 (PF986_02640) glp 561808..563100 (+) 1293 WP_014417621.1 gephyrin-like molybdotransferase Glp -
  PF986_RS02645 (PF986_02645) mobB 563061..563582 (+) 522 WP_029973679.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=775167 PF986_RS02620 WP_003154591.1 558362..558958(+) (rok) [Bacillus velezensis strain SRCM124349]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=775167 PF986_RS02620 WP_003154591.1 558362..558958(+) (rok) [Bacillus velezensis strain SRCM124349]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCGGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843