Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   PF986_RS02520 Genome accession   NZ_CP116013
Coordinates   542495..542959 (-) Length   154 a.a.
NCBI ID   WP_014417605.1    Uniprot ID   I2C4C5
Organism   Bacillus velezensis strain SRCM124349     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 537495..547959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF986_RS02500 (PF986_02500) - 537975..539795 (+) 1821 WP_094295717.1 PAS domain-containing protein -
  PF986_RS02505 (PF986_02505) - 539771..540990 (-) 1220 Protein_497 aminotransferase A -
  PF986_RS02510 (PF986_02510) - 541191..541352 (-) 162 WP_007409608.1 hypothetical protein -
  PF986_RS02515 (PF986_02515) cheV 541541..542452 (+) 912 WP_025649511.1 chemotaxis protein CheV -
  PF986_RS02520 (PF986_02520) kre 542495..542959 (-) 465 WP_014417605.1 YkyB family protein Regulator
  PF986_RS02525 (PF986_02525) - 543082..544374 (-) 1293 WP_014417606.1 MFS transporter -
  PF986_RS02530 (PF986_02530) - 544450..544944 (-) 495 WP_094296114.1 L,D-transpeptidase family protein -
  PF986_RS02535 (PF986_02535) - 545019..545882 (-) 864 WP_071181738.1 metallophosphoesterase -
  PF986_RS02540 (PF986_02540) fadH 546026..546790 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  PF986_RS02545 (PF986_02545) - 546904..547452 (+) 549 WP_017417677.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17812.60 Da        Isoelectric Point: 10.5497

>NTDB_id=775166 PF986_RS02520 WP_014417605.1 542495..542959(-) (kre) [Bacillus velezensis strain SRCM124349]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFRHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=775166 PF986_RS02520 WP_014417605.1 542495..542959(-) (kre) [Bacillus velezensis strain SRCM124349]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCGGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929