Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QU519_RS01245 Genome accession   NZ_CP128642
Coordinates   270521..271285 (-) Length   254 a.a.
NCBI ID   WP_001136235.1    Uniprot ID   -
Organism   Escherichia coli strain WL164     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 265521..276285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU519_RS01220 (QU519_01215) yhhJ 267363..268487 (+) 1125 WP_001314210.1 ABC transporter permease -
  QU519_RS01225 (QU519_01220) - 268560..268835 (+) 276 WP_001259385.1 type II toxin-antitoxin system HicA family toxin -
  QU519_RS01230 (QU519_01225) - 268832..269191 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  QU519_RS01235 (QU519_01230) nikR 269311..269712 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  QU519_RS01240 (QU519_01235) nikE 269718..270524 (-) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  QU519_RS01245 (QU519_01240) amiE 270521..271285 (-) 765 WP_001136235.1 nickel import ATP-binding protein NikD Regulator
  QU519_RS01250 (QU519_01245) nikC 271285..272118 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  QU519_RS01255 (QU519_01250) nikB 272115..273059 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  QU519_RS01260 (QU519_01255) nikA 273059..274633 (-) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  QU519_RS01265 (QU519_01260) acpT 274744..275331 (-) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26863.51 Da        Isoelectric Point: 6.5992

>NTDB_id=775150 QU519_RS01245 WP_001136235.1 270521..271285(-) (amiE) [Escherichia coli strain WL164]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVEMLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=775150 QU519_RS01245 WP_001136235.1 270521..271285(-) (amiE) [Escherichia coli strain WL164]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAATGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398