Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PF977_RS22470 Genome accession   NZ_CP116012
Coordinates   4262512..4262802 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain SRCM124333     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4257512..4267802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS22455 (PF977_22455) yabE 4257707..4259020 (-) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -
  PF977_RS22460 (PF977_22460) dayD 4259176..4259943 (-) 768 WP_015715098.1 TatD family hydrolase -
  PF977_RS22465 (PF977_22465) metG 4260023..4262017 (-) 1995 WP_015715097.1 methionine--tRNA ligase -
  PF977_RS22470 (PF977_22470) abrB 4262512..4262802 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  PF977_RS22475 (PF977_22475) rsmI 4262851..4263729 (-) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PF977_RS22480 (PF977_22480) yazA 4263704..4264003 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  PF977_RS22485 (PF977_22485) trmNF 4263990..4264733 (-) 744 WP_015715095.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PF977_RS22490 (PF977_22490) yabA 4264792..4265151 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  PF977_RS22495 (PF977_22495) ricT 4265166..4265993 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  PF977_RS22500 (PF977_22500) holB 4265996..4266985 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  PF977_RS22505 (PF977_22505) yaaR 4266997..4267437 (-) 441 WP_271259416.1 YaaR family protein -
  PF977_RS22510 (PF977_22510) darA 4267450..4267779 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=775148 PF977_RS22470 WP_003226760.1 4262512..4262802(+) (abrB) [Bacillus subtilis strain SRCM124333]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=775148 PF977_RS22470 WP_003226760.1 4262512..4262802(+) (abrB) [Bacillus subtilis strain SRCM124333]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1