Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   PF977_RS16835 Genome accession   NZ_CP116012
Coordinates   3193767..3194345 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM124333     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3188767..3199345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS16800 (PF977_16800) lepB 3188773..3189279 (-) 507 WP_003233128.1 signal peptidase I -
  PF977_RS16805 (PF977_16805) yhjE 3189281..3189904 (-) 624 WP_003233130.1 TVP38/TMEM64 family protein -
  PF977_RS16810 (PF977_16810) - 3190056..3190418 (+) 363 WP_003233132.1 hypothetical protein -
  PF977_RS16815 (PF977_16815) yhjC 3190626..3190826 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  PF977_RS16820 (PF977_16820) yhjB 3190823..3192292 (+) 1470 WP_003233134.1 sodium:solute symporter family protein -
  PF977_RS16825 (PF977_16825) yhjA 3192335..3192604 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  PF977_RS16830 (PF977_16830) yhxD 3192821..3193720 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  PF977_RS16835 (PF977_16835) comK 3193767..3194345 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  PF977_RS16840 (PF977_16840) yhzC 3194638..3194871 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  PF977_RS16845 (PF977_16845) yhxC 3194899..3195756 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  PF977_RS16850 (PF977_16850) comW 3195868..3197397 (+) 1530 WP_015715629.1 FAD-dependent oxidoreductase -
  PF977_RS22795 hemAT 3197653..3198030 (+) 378 Protein_3336 heme-based aerotactic transducer HemAT -
  PF977_RS22800 - 3198037..3198834 (+) 798 WP_420197420.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=775133 PF977_RS16835 WP_003245329.1 3193767..3194345(-) (comK) [Bacillus subtilis strain SRCM124333]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=775133 PF977_RS16835 WP_003245329.1 3193767..3194345(-) (comK) [Bacillus subtilis strain SRCM124333]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1