Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   PF977_RS14875 Genome accession   NZ_CP116012
Coordinates   2833698..2834162 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain SRCM124333     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2828698..2839162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS14855 (PF977_14855) fadH 2829886..2830650 (-) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -
  PF977_RS14860 (PF977_14860) ppeE 2830793..2831653 (+) 861 WP_003232400.1 metallophosphoesterase -
  PF977_RS14865 (PF977_14865) ltdD 2831710..2832204 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  PF977_RS14870 (PF977_14870) ykuC 2832280..2833572 (+) 1293 WP_003245267.1 MFS transporter -
  PF977_RS14875 (PF977_14875) kre 2833698..2834162 (+) 465 WP_003232406.1 YkyB family protein Regulator
  PF977_RS14880 (PF977_14880) cheV 2834206..2835117 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  PF977_RS14885 (PF977_14885) - 2835321..2835482 (+) 162 WP_003245246.1 hypothetical protein -
  PF977_RS14890 (PF977_14890) dapX 2835684..2836865 (+) 1182 WP_014476653.1 aminotransferase A -
  PF977_RS14895 (PF977_14895) kinA 2836875..2838695 (-) 1821 WP_015715804.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=775121 PF977_RS14875 WP_003232406.1 2833698..2834162(+) (kre) [Bacillus subtilis strain SRCM124333]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=775121 PF977_RS14875 WP_003232406.1 2833698..2834162(+) (kre) [Bacillus subtilis strain SRCM124333]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1