Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PF977_RS10020 Genome accession   NZ_CP116012
Coordinates   1899893..1900513 (-) Length   206 a.a.
NCBI ID   WP_015714153.1    Uniprot ID   A0A8E0VT51
Organism   Bacillus subtilis strain SRCM124333     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1894893..1905513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS10000 (PF977_10000) dnaD 1895184..1895882 (+) 699 WP_015714155.1 DNA replication protein DnaD -
  PF977_RS10005 (PF977_10005) nth 1895901..1896560 (+) 660 WP_009967580.1 endonuclease III -
  PF977_RS10010 (PF977_10010) ypoC 1896557..1897051 (+) 495 WP_015714154.1 YpoC family protein -
  PF977_RS10015 (PF977_10015) ponA 1897127..1899871 (-) 2745 WP_003230676.1 transglycosylase domain-containing protein -
  PF977_RS10020 (PF977_10020) recU 1899893..1900513 (-) 621 WP_015714153.1 Holliday junction resolvase RecU Machinery gene
  PF977_RS10025 (PF977_10025) yppC 1900554..1901516 (+) 963 WP_003230679.1 DUF2515 domain-containing protein -
  PF977_RS10030 (PF977_10030) sspM 1901541..1901645 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  PF977_RS10035 (PF977_10035) yppD 1901844..1902089 (+) 246 WP_015251831.1 YppD family protein -
  PF977_RS10040 (PF977_10040) yppE 1902135..1902506 (+) 372 WP_015714151.1 YppE family protein -
  PF977_RS10045 (PF977_10045) yppF 1902545..1902733 (-) 189 WP_003230690.1 YppF family protein -
  PF977_RS10050 (PF977_10050) sppG 1902921..1903298 (+) 378 WP_014477159.1 YppG family protein -
  PF977_RS10055 (PF977_10055) ypqA 1903319..1903738 (-) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  PF977_RS10060 (PF977_10060) ptsA 1903876..1904382 (+) 507 WP_015483368.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23915.08 Da        Isoelectric Point: 9.7224

>NTDB_id=775114 PF977_RS10020 WP_015714153.1 1899893..1900513(-) (recU) [Bacillus subtilis strain SRCM124333]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHAHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=775114 PF977_RS10020 WP_015714153.1 1899893..1900513(-) (recU) [Bacillus subtilis strain SRCM124333]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGCCCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995