Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   PF977_RS09015 Genome accession   NZ_CP116012
Coordinates   1720408..1721211 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM124333     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1715408..1726211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS08995 (PF977_08995) yqxC 1715519..1716364 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  PF977_RS09000 (PF977_09000) argR 1716462..1716911 (+) 450 WP_003230265.1 arginine repressor ArgR -
  PF977_RS09005 (PF977_09005) recN 1716948..1718678 (+) 1731 WP_015714238.1 DNA repair protein RecN Machinery gene
  PF977_RS09010 (PF977_09010) spoIVB 1718852..1720132 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  PF977_RS09015 (PF977_09015) spo0A 1720408..1721211 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  PF977_RS09020 (PF977_09020) yqiG 1721676..1722794 (-) 1119 WP_015714237.1 NADH-dependent flavin oxidoreductase -
  PF977_RS09025 (PF977_09025) - 1722867..1723019 (-) 153 WP_014480226.1 hypothetical protein -
  PF977_RS09030 (PF977_09030) yqiH 1723327..1723620 (+) 294 WP_003230284.1 lipoprotein -
  PF977_RS09035 (PF977_09035) yqiI 1723635..1724255 (+) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase family protein -
  PF977_RS09040 (PF977_09040) glpQB 1724334..1725065 (+) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=775113 PF977_RS09015 WP_003226427.1 1720408..1721211(+) (spo0A) [Bacillus subtilis strain SRCM124333]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=775113 PF977_RS09015 WP_003226427.1 1720408..1721211(+) (spo0A) [Bacillus subtilis strain SRCM124333]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAAGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1