Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   PF977_RS06825 Genome accession   NZ_CP116012
Coordinates   1344583..1345329 (+) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM124333     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1339583..1350329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS06810 (PF977_06810) - 1339810..1340001 (-) 192 WP_003222590.1 hypothetical protein -
  PF977_RS06815 (PF977_06815) valS 1340449..1343091 (+) 2643 WP_015714461.1 valine--tRNA ligase -
  PF977_RS06820 (PF977_06820) folC 1343151..1344443 (+) 1293 WP_015714460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  PF977_RS06825 (PF977_06825) comC 1344583..1345329 (+) 747 WP_072592551.1 prepilin peptidase Machinery gene
  PF977_RS06830 (PF977_06830) spoIIB 1345463..1346461 (+) 999 WP_015714459.1 stage II sporulation protein SpoIIB -
  PF977_RS06835 (PF977_06835) maf 1346614..1347183 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  PF977_RS06840 (PF977_06840) radC 1347220..1347915 (+) 696 WP_003246034.1 RadC family protein -
  PF977_RS06845 (PF977_06845) mreB 1348007..1349020 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  PF977_RS06850 (PF977_06850) mreC 1349051..1349923 (+) 873 WP_009967915.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=775094 PF977_RS06825 WP_072592551.1 1344583..1345329(+) (comC) [Bacillus subtilis strain SRCM124333]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=775094 PF977_RS06825 WP_072592551.1 1344583..1345329(+) (comC) [Bacillus subtilis strain SRCM124333]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996