Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PF977_RS04845 Genome accession   NZ_CP116012
Coordinates   956447..957091 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM124333     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 951447..962091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS04815 (PF977_04815) - 951797..952165 (-) 369 WP_014477834.1 hypothetical protein -
  PF977_RS04820 (PF977_04820) - 952279..952404 (-) 126 WP_003228793.1 hypothetical protein -
  PF977_RS04825 (PF977_04825) degQ 952626..952766 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  PF977_RS04830 (PF977_04830) - 952951..953820 (+) 870 WP_015714626.1 polyprenyl synthetase family protein -
  PF977_RS04835 (PF977_04835) comX 953817..954038 (+) 222 WP_014114983.1 competence pheromone ComX -
  PF977_RS04840 (PF977_04840) comP 954054..956366 (+) 2313 WP_144460405.1 histidine kinase Regulator
  PF977_RS04845 (PF977_04845) comA 956447..957091 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  PF977_RS04850 (PF977_04850) yuxO 957110..957490 (+) 381 WP_015714624.1 hotdog fold thioesterase -
  PF977_RS04855 (PF977_04855) mnhG 957529..957903 (-) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  PF977_RS04860 (PF977_04860) mrpF 957887..958171 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  PF977_RS04865 (PF977_04865) mrpE 958171..958647 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  PF977_RS04870 (PF977_04870) mrpD 958653..960134 (-) 1482 WP_015714622.1 Na+/H+ antiporter subunit D -
  PF977_RS04875 (PF977_04875) mrpC 960127..960468 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  PF977_RS04880 (PF977_04880) mrpB 960468..960899 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=775089 PF977_RS04845 WP_003220716.1 956447..957091(+) (comA) [Bacillus subtilis strain SRCM124333]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=775089 PF977_RS04845 WP_003220716.1 956447..957091(+) (comA) [Bacillus subtilis strain SRCM124333]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1