Detailed information NTG0775086

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QU520_RS05140
• Genome accession: NZ_CP128613
• Coordinates: 1056666..1057658 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WL297
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1051666..1062658

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QU520_RS05110 (QU520_05110)	ispD	1051727..1052437 (+)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QU520_RS05115 (QU520_05115)	ispF	1052437..1052916 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QU520_RS05120 (QU520_05120)	truD	1052913..1053962 (+)	1050	WP_000568910.1	tRNA pseudouridine(13) synthase TruD	-
QU520_RS05125 (QU520_05125)	surE	1053943..1054704 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QU520_RS05130 (QU520_05130)	pcm	1054698..1055324 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QU520_RS05135 (QU520_05135)	nlpD	1055509..1056603 (+)	1095	WP_306299019.1	murein hydrolase activator NlpD	-
QU520_RS05140 (QU520_05140)	rpoS	1056666..1057658 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QU520_RS05145 (QU520_05145)	-	1057779..1058186 (-)	408	WP_001208080.1	MarR family transcriptional regulator	-
QU520_RS05150 (QU520_05150)	-	1058333..1058926 (+)	594	WP_000767723.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QU520_RS05155 (QU520_05155)	-	1058926..1060353 (+)	1428	WP_039021012.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QU520_RS05160 (QU520_05160)	-	1060364..1060600 (+)	237	WP_000562989.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QU520_RS05165 (QU520_05165)	ygbN	1060639..1062003 (-)	1365	WP_000104457.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=775086 QU520_RS05140 WP_000081550.1 1056666..1057658(+) (rpoS) [Escherichia coli strain WL297]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=775086 QU520_RS05140 WP_000081550.1 1056666..1057658(+) (rpoS) [Escherichia coli strain WL297]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAAGGGGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGAGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCTTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAGCTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGAGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAAAACGGCCCGGAAGACACCACGCAAGATGACGATATGAAACAAAGCATCGTCAAATGGCTGTTCGAACTGAA
CGCCAAGCAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGATACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715