Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QU520_RS00890 Genome accession   NZ_CP128613
Coordinates   190272..191255 (+) Length   327 a.a.
NCBI ID   WP_001196486.1    Uniprot ID   A7ZT85
Organism   Escherichia coli strain WL297     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 185272..196255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU520_RS00875 (QU520_00875) dppA 186415..188022 (+) 1608 WP_001222892.1 dipeptide ABC transporter substrate-binding protein DppA -
  QU520_RS00880 (QU520_00880) dppB 188330..189349 (+) 1020 WP_000938853.1 dipeptide ABC transporter permease DppB -
  QU520_RS00885 (QU520_00885) dppC 189359..190261 (+) 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
  QU520_RS00890 (QU520_00890) amiE 190272..191255 (+) 984 WP_001196486.1 dipeptide ABC transporter ATP-binding protein Regulator
  QU520_RS00895 (QU520_00895) dppF 191252..192256 (+) 1005 WP_000107019.1 dipeptide ABC transporter ATP-binding subunit DppF -
  QU520_RS00900 (QU520_00900) yhjV 192286..193557 (-) 1272 WP_129014991.1 amino acid permease -
  QU520_RS00905 (QU520_00905) - 194033..194140 (+) 108 WP_001295224.1 type I toxin-antitoxin system toxin Ldr family protein -
  QU520_RS00910 (QU520_00910) - 194516..194623 (+) 108 WP_000170736.1 type I toxin-antitoxin system toxin Ldr family protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35844.36 Da        Isoelectric Point: 6.5814

>NTDB_id=775071 QU520_RS00890 WP_001196486.1 190272..191255(+) (amiE) [Escherichia coli strain WL297]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=775071 QU520_RS00890 WP_001196486.1 190272..191255(+) (amiE) [Escherichia coli strain WL297]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCACCGTTCCGCGCCGTAGACCGTATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGAATTGTGGGTGAGTCTGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTGATGGCAGAAAAGCTGGAGTTTAACGGCCAGGATTTGCAGCGTATCTCGGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTTCAGGACCCGATGACCAGCCTCAACCCGTGTTACAC
CGTAGGTTTCCAGATTATGGAAGCAATTAAAGTGCATCAGGGCGGTAATAAGAGCACTCGCCGTCAGCGGGCGATTGATC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCTGGCGGCATGAGCCAG
CGTGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCTGATGAGCCGACCACCGCGCTGGACGTGAC
CATTCAGGCACAAATCATCGAACTGCTGCTGGAGCTGCAGCAGAAAGAGAACATGGCGCTGGTGTTGATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCGCATAAAATCATCGTCATGTATGCAGGCCAGGTGGTGGAAACGGGCGATGCCCACGCC
ATCTTCCATGCACCGCGTCATCCGTATACTCAGGCATTGCTGCGCGCGCTGCCGGAATTTGCCCAGGACAAAGAACGTCT
GGCGTCATTGCCTGGCGTCGTTCCTGGCAAATACGACCGACCGAATGGCTGCCTGCTTAACCCGCGTTGCCCCTATGCCA
CTGACAGATGCCGTGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCCACACTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(24-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMG 18311

42.991

98.165

0.422
  amiE Streptococcus thermophilus LMD-9

42.991

98.165

0.422
  oppD Streptococcus mutans UA159

41.379

97.554

0.404