Detailed information NTG0775065

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: PF976_RS18225
• Genome accession: NZ_CP116011
• Coordinates: 3511898..3513043 (+)
• Length: 381 a.a.
• NCBI ID: WP_147785970.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain SRCM124317
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3506898..3518043

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF976_RS18205 (PF976_18205)	argS	3507577..3509247 (-)	1671	WP_013353950.1	arginine--tRNA ligase	-
PF976_RS18210 (PF976_18210)	-	3509244..3509672 (-)	429	WP_013353951.1	DUF1934 domain-containing protein	-
PF976_RS18215 (PF976_18215)	-	3509826..3510285 (+)	460	Protein_3557	bacteriocin biosynthesis protein AlbG	-
PF976_RS18220 (PF976_18220)	-	3510291..3511685 (-)	1395	WP_014471165.1	YncE family protein	-
PF976_RS18225 (PF976_18225)	rapF	3511898..3513043 (+)	1146	WP_147785970.1	tetratricopeptide repeat protein	Regulator
PF976_RS18230 (PF976_18230)	phrF	3513027..3513146 (+)	120	WP_014471166.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
PF976_RS18235 (PF976_18235)	speB	3513260..3514132 (-)	873	WP_013353956.1	agmatinase	-
PF976_RS18240 (PF976_18240)	speE	3514191..3515021 (-)	831	WP_013353957.1	spermidine synthase	-
PF976_RS18245 (PF976_18245)	-	3515221..3517293 (+)	2073	WP_013353958.1	transglycosylase domain-containing protein	-
PF976_RS18250 (PF976_18250)	-	3517318..3517749 (-)	432	WP_013353959.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45508.59 Da
• Isoelectric Point: 4.6393

>NTDB_id=775065 PF976_RS18225 WP_147785970.1 3511898..3513043(+) (rapF) [Bacillus amyloliquefaciens strain SRCM124317]
MASVVSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELASLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVTDQIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAKEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLKDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=775065 PF976_RS18225 WP_147785970.1 3511898..3513043(+) (rapF) [Bacillus amyloliquefaciens strain SRCM124317]
GTGGCGAGTGTTGTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAAGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTGGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAATTGACGTACG
TTACAGATCAGATAGAAAAAGCGGAATTTTACTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGGCTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATCAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTTCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGGCAATATCATGACAAAGGAGTATCTTACGCGAAGG
AGGCGGAAGATTCATTATATATAGTGGAGTATGAATTTTTAGAATCTTTGTACGTCGGTGAGCCTGATGAAGAAGCAATT
ATGGAATGTTTTGACTTCCTCAAGGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
CCACGAGAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAAGTGGAAGAAACAAGACAGCAAATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.215	100	0.782
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57